Plant FIBer expression Database

Potri.001G138200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32260 216 / 1e-71 unknown protein
AT2G35480 170 / 9e-54 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G095600
[exp]
350 / 9e-125 AT1G32260 218 / 2e-72 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030982
[exp]
232 / 4e-78 AT1G32260 219 / 3e-73 unknown protein
Lus10035377
[exp]
227 / 5e-76 AT1G32260 214 / 3e-71 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G138200.1 pacid=42789579 polypeptide=Potri.001G138200.1.p locus=Potri.001G138200 ID=Potri.001G138200.1.v4.1 annot-version=v4.1
ATGGTGCTATGGGAGATCACATTGGGAACTGCGTATTTTTTGGGTTTGAAACGGGCTTACAAATTGGCTTCAAGGATTCAACTTAGGGTTATAAGCCCCA
AGTACCCTAGGATTCGTCAGTTTGTTCAGAGACGAACACGTGCTATTTTTGATGTTGCTCTGAAGGTTCACCTGAATGTACAGCAAAGAGACATAGAGGT
TGGTCGAAATCTTGGTAACAGGATTCTGAGGTGGCTGCACCAAATGAAACCTTCCGCTCAGATTCATGGTCCCTCACCTGAGAAACCCACAAATGGTGCT
AGCTCAAATATGAGTGTTACAAACCAGGTAACCAACACTTCCCACCTGAAAGCTTCGGGCATTGGCCAGACGTCTAGATGCCAAGAATCTTATAGGCACC
TTTTCACCTCAGCAAGGAGTACGTGGTCAAAACCATTTCCTTCCATTGCAATGATGATGCGACCATCAAGACCTGCTGGGATTTTTACACAGTACAGGCA
CTTGAGCATCCAGGGCCCTGAAATGTCAAGGCCAAACAGTATTGGTGGTGGATGTGGGTTTCAGGGGGTTTTCCGGAAGGACATGATGCAGTATATACTG
CAAAACTAA
AA sequence
>Potri.001G138200.1 pacid=42789579 polypeptide=Potri.001G138200.1.p locus=Potri.001G138200 ID=Potri.001G138200.1.v4.1 annot-version=v4.1
MVLWEITLGTAYFLGLKRAYKLASRIQLRVISPKYPRIRQFVQRRTRAIFDVALKVHLNVQQRDIEVGRNLGNRILRWLHQMKPSAQIHGPSPEKPTNGA
SSNMSVTNQVTNTSHLKASGIGQTSRCQESYRHLFTSARSTWSKPFPSIAMMMRPSRPAGIFTQYRHLSIQGPEMSRPNSIGGGCGFQGVFRKDMMQYIL
QN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G32260 unknown protein Potri.001G138200
[exp]
0 1
AT2G27460 sec23/sec24 transport family p... Potri.004G201800
[exp]
1.00 0.8647
AT1G58440 SQE1, XF1 SQUALENE EPOXIDASE 1, FAD/NAD(... Potri.005G146700
[exp]
1.41 0.8365 Pt-XF1.2
AT1G78540 STATLB, ATSHB STAT-TYPE LINKER-SH2 DOMAIN FA... Potri.011G102100
[exp]
3.00 0.8322
AT4G13870 WRNEXO, ATWRNEX... Werner syndrome-like exonuclea... Potri.017G059200
[exp]
3.74 0.8022
AT4G19210 ABCE2, ATRLI2 ARABIDOPSIS THALIANA RNASE L I... Potri.004G235900
[exp]
4.24 0.7989 Pt-ATRLI1.1
AT5G47430 DWNN domain, a CCHC-type zinc ... Potri.013G112200
[exp]
11.66 0.8101
AT4G21790 ATTOM1, TOM1 tobamovirus multiplication 1 (... Potri.004G018100
[exp]
15.36 0.7366 TOM1.2
AT5G43950 Plant protein of unknown funct... Potri.014G193100
[exp]
16.97 0.7567
AT2G01480 O-fucosyltransferase family pr... Potri.008G130600
[exp]
19.41 0.7869
AT3G14470 NB-ARC domain-containing disea... Potri.004G076700
[exp]
19.74 0.7262

Potri.001G138200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.