Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SYP23.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46860 379 / 1e-133 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT4G17730 359 / 2e-126 ATSYP23, SYP23 syntaxin of plants 23 (.1.2) AT5G16830 280 / 1e-94 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1) AT1G32270 206 / 8e-64 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT4G02195 46 / 1e-05 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT5G26980 46 / 2e-05 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT3G05710 45 / 3e-05 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT3G03800 43 / 0.0002 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT3G52400 41 / 0.0006 ATSYP122, SYP122 syntaxin of plants 122 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G095300 [exp] 451 / 3e-162 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 215 / 2e-69 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.005G020800 [exp] 47 / 5e-06 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 46 / 1e-05 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.006G202200 [exp] 46 / 1e-05 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.019G036700 [exp] 44 / 7e-05 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.002G200400 [exp] 44 / 8e-05 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030953 [exp] 416 / 3e-148 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10040094 [exp] 415 / 5e-148 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10000311 [exp] 186 / 1e-59 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 188 / 5e-54 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10020683 [exp] 47 / 7e-06 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10029864 [exp] 45 / 3e-05 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 44 / 6e-05 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10031466 [exp] 43 / 0.0001 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10042527 [exp] 42 / 0.0002 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain CL0445 [poplar] [flax] SNARE-fusion PF14523 [poplar] [flax] Syntaxin_2 Syntaxin-like protein
Representative CDS sequence Show only first row Show all	>Potri.001G138500.2 pacid=42788307 polypeptide=Potri.001G138500.2.p locus=Potri.001G138500 ID=Potri.001G138500.2.v4.1 annot-version=v4.1 ATGAGCTTTCAAGATCTGGAGGCGGGACGACCCTTGGCATCTTCAAGGAGAGAGCTGATCAACGGCAAACAAGATGCCACGCAAGCGGTTGCTTCTGGAA TCTTCCAGATCAACACTGCCGTTTCGACTTTTCAGCGTCTTGTTAATACCCTTGGGACTCCTAAAGACACGCCTGAGCTCCGGGAGAAGCTGCATAAAAC AAGGCTACATATTGGGCAATTGGTGAAGGATACTTCAGCCAGACTTAAACAAGCTAGTGAAACAGATCATTATGCTGGAGTCAGTCAAAGCAAAAAGATT GCTGATGCTAAATTAGCAAAAGATTTTCAAGCAGTTTTGAAAGAATTTCAGAAGGCTCAGCGGCTTGCGGCTGAGAGGGAAACGGCATATACTCCTTTTG TTCCCCAAGCAGTCCTTCCTTCCAGCTACACAGCCAGTGAAATAGATTTAAGTTTTGATAAAAGTCCAGAACAACGTGCTATCCTTGTGGAGTCAAGAAG ACAGGAGGTCCTACTATTGGACAATGAGATTGCCTTCAATGAGGCTGTTATCGAGGAGAGAGAACAGGGAATACATGAAATTCAGCAGCAAATTGGTGAG GTGAATGAGATTTTTAAAGATCTTGCTGTCCTTGTCCATGAACAAGGAACTATGATTGATGATATTGGCTCCCATATTGAAAATTCCCAGGCTGCAACAG CACAGGGAAAATCCCACCTTGTGAAAGCTGCAAAGACTCAGAGATCAAATTCTTCTCTGGCCTGCTTGCTCATGGTGATATTCGGGATTGTGATTCTCAT TGTGATCGTAGTACTTGCTGCATAA
AA sequence Show only first row Show all	>Potri.001G138500.2 pacid=42788307 polypeptide=Potri.001G138500.2.p locus=Potri.001G138500 ID=Potri.001G138500.2.v4.1 annot-version=v4.1 MSFQDLEAGRPLASSRRELINGKQDATQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSARLKQASETDHYAGVSQSKKI ADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTASEIDLSFDKSPEQRAILVESRRQEVLLLDNEIAFNEAVIEEREQGIHEIQQQIGE VNEIFKDLAVLVHEQGTMIDDIGSHIENSQAATAQGKSHLVKAAKTQRSNSSLACLLMVIFGIVILIVIVVLAA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Potri.001G138500 [exp]	0	1	Pt-SYP23.2
AT3G49800			BSD domain-containing protein ...		Potri.014G008400 [exp]	2.00	0.8962
AT1G10720			BSD domain-containing protein ...		Potri.014G014200 [exp]	6.78	0.9008
AT1G79990			structural molecules (.1.2.3.4...		Potri.003G056100 [exp]	9.79	0.8893
AT4G27880			Protein with RING/U-box and TR...		Potri.015G013000 [exp]	14.17	0.8212
AT3G48140			B12D protein (.1)		Potri.012G074900 [exp]	15.00	0.8632
AT2G03690			coenzyme Q biosynthesis Coq4 f...		Potri.008G097100 [exp]	15.42	0.8383
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	16.37	0.8853
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Potri.010G057600 [exp]	23.81	0.8438
AT5G04840	bZIP		bZIP protein (.1)		Potri.008G018400 [exp]	24.08	0.8763
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.013G157900 [exp]	26.15	0.8778	C4H2,CYP73.2

Compare expression of checked genes

Potri.001G138500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.