Plant FIBer expression Database

Potri.001G138700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32310 98 / 7e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G095100
[exp]
142 / 1e-45 AT1G32310 91 / 5e-25 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030955
[exp]
123 / 6e-38 AT1G32310 99 / 3e-28 unknown protein
Lus10040092
[exp]
116 / 5e-35 AT1G32310 87 / 1e-23 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G138700.2 pacid=42791429 polypeptide=Potri.001G138700.2.p locus=Potri.001G138700 ID=Potri.001G138700.2.v4.1 annot-version=v4.1
ATGAACAGCACATCACCAACAAATTCATCAGTATCAACAACAGCAATTATTGGAGGTGGAGGAGGAAGTGTTAGCAATGCTGCTTTGGATGATTTTCATT
TCCCTTCTGATTTAATTTCCATCCAAGACCGCAAAGATGAGGCGATGCTTGCACTAAAAACTGATCTGATGGCTGCACTTAACAAGGAGGTTAAATCCTT
GGATGAAGATAACTGGAAGTTTGGAGGGCCTCGTTCTCGTATTAACCTTATATCAAGACCAGGTGGATTTCTAAGCAAGAAGTTGGAAATAACAAAGAAA
AAGAACTTGGCCTTGCCGAAATGA
AA sequence
>Potri.001G138700.2 pacid=42791429 polypeptide=Potri.001G138700.2.p locus=Potri.001G138700 ID=Potri.001G138700.2.v4.1 annot-version=v4.1
MNSTSPTNSSVSTTAIIGGGGGSVSNAALDDFHFPSDLISIQDRKDEAMLALKTDLMAALNKEVKSLDEDNWKFGGPRSRINLISRPGGFLSKKLEITKK
KNLALPK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G32310 unknown protein Potri.001G138700
[exp]
0 1
Potri.001G355650
[exp]
2.64 0.9299
AT5G55810 ATNMNAT nicotinate/nicotinamide mononu... Potri.013G021900
[exp]
8.30 0.9120
AT1G58070 unknown protein Potri.003G009400
[exp]
9.16 0.8967
AT2G14830 Regulator of Vps4 activity in ... Potri.009G090100
[exp]
10.09 0.7859
AT4G33380 unknown protein Potri.002G127700
[exp]
12.24 0.8486
AT2G03350 Protein of unknown function, D... Potri.010G162400
[exp]
13.19 0.8994
AT5G01350 unknown protein Potri.006G101901
[exp]
15.87 0.8661
AT1G29810 Transcriptional coactivator/pt... Potri.001G352800
[exp]
16.30 0.8343
AT5G01340 AtmSFC1 mitochondrial succinate-fumara... Potri.016G119650
[exp]
16.58 0.8835
AT4G08230 glycine-rich protein (.1.2) Potri.005G174700
[exp]
16.97 0.8436

Potri.001G138700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.