Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATMKK10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32320 232 / 4e-75 ATMKK10 MAP kinase kinase 10 (.1) AT1G73500 183 / 4e-56 ATMKK9 MAP kinase kinase 9 (.1) AT1G18350 177 / 5e-54 ATMKK7, BUD1 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) AT3G06230 156 / 5e-46 ATMKK8 MAP kinase kinase 8 (.1) AT3G21220 155 / 6e-45 ATMAP2K_ALPHA, ATMKK5, ATMEK5 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) AT1G51660 151 / 4e-43 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) AT4G26070 131 / 4e-36 NMAPKK, MKK1, ATMEK1, MEK1 MITOGEN ACTIVATED PROTEIN KINASE KINASE 1, MAP kinase/ ERK kinase 1 (.1.2.3) AT4G29810 131 / 6e-36 MK1, ATMKK2 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) AT5G56580 126 / 7e-34 ANQ1, ATMKK6 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) AT1G69220 106 / 2e-25 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030700 [exp] 191 / 7e-59 AT1G73500 392 / 9e-138 MAP kinase kinase 9 (.1) Potri.012G043200 [exp] 190 / 9e-59 AT1G73500 381 / 2e-133 MAP kinase kinase 9 (.1) Potri.008G009800 [exp] 156 / 3e-45 AT3G21220 474 / 9e-169 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.010G249300 [exp] 155 / 5e-45 AT3G21220 474 / 1e-168 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5, MAP kinase kinase 5 (.1) Potri.008G183700 [exp] 155 / 6e-45 AT1G18350 289 / 5e-97 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.010G049500 [exp] 152 / 5e-44 AT1G18350 288 / 1e-96 MAP KINASE KINASE7, BUSHY AND DWARF 1, MAP kinase kinase 7 (.1) Potri.006G146500 [exp] 137 / 6e-38 AT4G29810 495 / 7e-177 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Potri.018G068500 [exp] 135 / 3e-37 AT5G56580 588 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Potri.018G050800 [exp] 135 / 3e-37 AT4G29810 540 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035764 [exp] 145 / 4e-41 AT1G51660 500 / 7e-179 ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4, mitogen-activated protein kinase kinase 4 (.1) Lus10012938 [exp] 137 / 5e-38 AT5G56580 621 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10034986 [exp] 137 / 8e-38 AT5G56580 605 / 0.0 ARABIDOPSIS THALIANA MAP KINASE KINASE 6, ARABIDOPSIS NQK1, MAP kinase kinase 6 (.1) Lus10001081 [exp] 125 / 1e-34 AT1G73500 296 / 2e-101 MAP kinase kinase 9 (.1) Lus10027623 [exp] 122 / 6e-32 AT4G29810 520 / 0.0 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10011945 [exp] 110 / 3e-27 AT4G29810 407 / 4e-140 MAP KINASE KINASE 1, MAP kinase kinase 2 (.1.2.3) Lus10036915 [exp] 107 / 6e-26 AT1G69220 917 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040127 [exp] 100 / 2e-25 AT1G73500 164 / 1e-50 MAP kinase kinase 9 (.1) Lus10037070 [exp] 105 / 3e-25 AT1G69220 909 / 0.0 Protein kinase superfamily protein (.1.2) Lus10022265 [exp] 100 / 1e-23 AT5G40440 861 / 0.0 mitogen-activated protein kinase kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.001G138800.2 pacid=42792281 polypeptide=Potri.001G138800.2.p locus=Potri.001G138800 ID=Potri.001G138800.2.v4.1 annot-version=v4.1 ATGACTTTGGTGAGAGAGAGAAGGCACCAACAACCACTAAGGCTATCCCTACCACCACCCATACCTGCAGCTGACTTCCGGCATCAGATCCATTCGCCAT CATTATCATTGACCATTAGTCCAGATTCTCCAAGCATAGAGAAGCTCTCAGACCTAGAAAAACTGGCGGTTCTTGGCCATGGCAATAGTGGCACGGTCTA TAAAGTACGGCACAAACGCAGCTCCTCCATATTTGCATTGAAAACCCTCCGTTTCGACCGAAACTCCACCATAATTCGCCAACAAGCAGGAAGGGAGGCA GAGATCCTTAGACGCGTGGATTCACCTTACGTTGTCCAGTGCCATGCGGTTTTTGATAGTGAGGATGACTTGTACTTTGCAATGGAGCACATGGAAAGAG GATCACTGCATGATGTTCTGCTTGTACACAGAATATTGCCTGAGGATGTCATATCTGGTGTGGCACGGTGCATTCTGAATGGGTTACAGTATCTCCATGA GAAGCAGATAGTACATGGGGACATAAAACCCTCAAATCTACTGATAAATGCTGAAGGAGTGGTTAAGATTGCAGATTTTGGAGTGAGTAGGGTAGTGGTG GGAAAACATGATTCATATGAGACTTATATGGGAACATGTGCTTACATGAGTCCTGAGAGAATTGATCCTGAGAGATGGGATTGGAAATGGAGATCACGGA TTCGCAGGAGATGTTTGGTCACTTGGGGTGGTAGTTTTGGAGTGCCTGGTGGGTCATTATCCATTGATTGGTTGTGGAGAGAAACCAGACTGGGCAGCAT TGGTGTGTGCTATATGCTTTGGGGAGAGATTGCAAATGCCGAAGAGTGCATCCAGCAGGATTCAAAGCTTTGTTAG
AA sequence Show only first row Show all	>Potri.001G138800.2 pacid=42792281 polypeptide=Potri.001G138800.2.p locus=Potri.001G138800 ID=Potri.001G138800.2.v4.1 annot-version=v4.1 MTLVRERRHQQPLRLSLPPPIPAADFRHQIHSPSLSLTISPDSPSIEKLSDLEKLAVLGHGNSGTVYKVRHKRSSSIFALKTLRFDRNSTIIRQQAGREA EILRRVDSPYVVQCHAVFDSEDDLYFAMEHMERGSLHDVLLVHRILPEDVISGVARCILNGLQYLHEKQIVHGDIKPSNLLINAEGVVKIADFGVSRVVV GKHDSYETYMGTCAYMSPERIDPERWDWKWRSRIRRRCLVTWGGSFGVPGGSLSIDWLWRETRLGSIGVCYMLWGEIANAEECIQQDSKLC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32320		ATMKK10	MAP kinase kinase 10 (.1)		Potri.001G138800 [exp]	0	1	Pt-ATMKK10.1
AT3G23200			Uncharacterised protein family...		Potri.008G165500 [exp]	2.23	0.8709
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.007G014400 [exp]	4.89	0.8635
AT5G15790			RING/U-box superfamily protein...		Potri.017G100100 [exp]	7.74	0.8525
AT3G21530			DNAse I-like superfamily prote...		Potri.008G198100 [exp]	8.36	0.8490
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	9.00	0.8630
AT3G26700			Protein kinase superfamily pro...		Potri.014G144800 [exp]	10.00	0.8113
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	16.06	0.8476
AT5G48385			FRIGIDA-like protein (.1)		Potri.014G175200 [exp]	19.26	0.7749
AT3G28540			P-loop containing nucleoside t...		Potri.017G123800 [exp]	21.63	0.7337
AT4G28380			Leucine-rich repeat (LRR) fami...		Potri.007G139200 [exp]	21.63	0.8232

Compare expression of checked genes

Potri.001G138800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.