Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32330 407 / 3e-138 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 341 / 4e-112 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 329 / 2e-107 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 328 / 2e-107 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G22830 229 / 6e-70 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT2G26150 216 / 1e-65 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT5G03720 185 / 4e-53 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT4G13980 181 / 4e-51 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1) AT3G51910 174 / 2e-50 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT1G67970 172 / 1e-48 HSF AT-HSFA8 heat shock transcription factor A8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G095000 [exp] 671 / 0 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 348 / 1e-114 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.005G214800 [exp] 235 / 6e-73 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 234 / 2e-72 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 231 / 2e-71 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 230 / 1e-70 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.002G048200 [exp] 227 / 9e-70 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.014G141400 [exp] 213 / 3e-63 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.004G062300 [exp] 208 / 6e-62 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030956 [exp] 501 / 5e-175 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 498 / 1e-173 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10011065 [exp] 459 / 1e-158 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 458 / 3e-158 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10040911 [exp] 301 / 3e-97 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10006618 [exp] 237 / 3e-73 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 231 / 5e-71 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10013797 [exp] 206 / 9e-62 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10014698 [exp] 205 / 5e-61 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 202 / 5e-60 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.001G138900.3 pacid=42790401 polypeptide=Potri.001G138900.3.p locus=Potri.001G138900 ID=Potri.001G138900.3.v4.1 annot-version=v4.1 ATGGATGGAATAAACACCACTGCAAGCGGTGGCGACGCCTCTACTAGCGGCGGTGTAGCACAAGCGGCGCCGGTGCCGATGGCGTCCCAGTCAAATTCTC CGCCGCCATTTCTGAGTAAGACTTACGACATGGTAGACGACCCGGAGACCGACGCCGTGGTGTCTTGGAGTTCGACGAATAATAGTTTTGTGGTTTGGAA TCCGCCGGAGTTCGCTCGCGATCTTTTGCCGAAGTATTTTAAGCATAATAACTTCTCCAGCTTTGTTAGGCAACTTAATACATACGGTTTTCGAAAGGTG GATCCAGACCGTTGGGAATTCGCCAATGAAGGATTTTTGAGGGGTCAGAAGCACCTGCTTAGGACTATCAGTCGGCGAAAACCTGCCCATGGACATACTA ATCAACAGCCGCAACAAGCTCGTGGACAGAACTCAACTGTTGGCGCTTGTGTTGAGGTTGGAAAATTTGGGCTTGAGGAAGAGGTAGAGAGGCTTAAGAG GGACAAGAATGTTCTTATGCAAGAACTTGTTAGGTTGAGGCAGCAGCAACAGTCCACGGATAGCCAGTTGCAAACCATGGTGCAGCGACTTCAAGGGATG GAGCAGCGTCAGCAACAGATGATGTCATTCCTGGCAAAGGCTATGCAGAGCCCGGGCTTCCTGGCTCAGTTTGTACAGCAGCAAAATGAAAGCAGCAGGC GCATAACAGAAGCCAACAAAAAACGAAGGCTCAAGCCTGAGGATGTTTCTGAGAATGAGGGTTCTAGTGCTCCTGATGGACAGATTGTGAAGTATCAGCC TCAGATGAACGAGGCAGCCAAAGCAATGCTCAGGCAGGTCATGAAAATGGATGCTCCTTCTAGGTTGGAATCTTATGACACCAATCTTGATGGCTTCCTG ATTGGTAATGGTTCACCATCATCTAGTGCAAAAGACAGCGGAAGCTCTTCAAGCCGCATGTCAGGAGTGACTCTTCAAGAGGTCCCAGCAGCTTCAGGGA TTTCCGGACATGGCCCCATGGCTGCCATATCTGAAATACAATCTTCCCCACACATTGCTAGCTCAGAAAAGGCTACAGCTTCTCAGTTTCCGGAAAGTAT ACTGGTTGGAGGACAAGGAGCACCCTCCATACCTATTCCACAGGCAGATATAATCATGCCCCAGGTTTCTCAAAAGCCAGAAATGGTGCCAGAAATTATT GCTGATATTCCTGGTGAAGATTACATGGAACCAGAGACAAGCAGTGATGTGTTCCTAGATCCAGCTTCACTTGGAATTAATGATACAATACCCATAGATA TTGACAACATCTCCCCTGATCCTGATATCGATGCTTTGCTTGATAATTCTAGCTTCTGGGATGACCTTCTTGCGCAGAGTCCAGTGCCTGAGGATATTGA ATCAAGTTCTGTGGAGGGTAAAGCCAATGGAAATGATGTACATCAAATTATAAACGGGTGGGACAAAGCTCAGCATATGGATCAGCTGACAGAACAAATG GGACTTCTCTCATCAGATCGCAAGCAGCTTTAA
AA sequence Show only first row Show all	>Potri.001G138900.3 pacid=42790401 polypeptide=Potri.001G138900.3.p locus=Potri.001G138900 ID=Potri.001G138900.3.v4.1 annot-version=v4.1 MDGINTTASGGDASTSGGVAQAAPVPMASQSNSPPPFLSKTYDMVDDPETDAVVSWSSTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKV DPDRWEFANEGFLRGQKHLLRTISRRKPAHGHTNQQPQQARGQNSTVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDSQLQTMVQRLQGM EQRQQQMMSFLAKAMQSPGFLAQFVQQQNESSRRITEANKKRRLKPEDVSENEGSSAPDGQIVKYQPQMNEAAKAMLRQVMKMDAPSRLESYDTNLDGFL IGNGSPSSSAKDSGSSSSRMSGVTLQEVPAASGISGHGPMAAISEIQSSPHIASSEKATASQFPESILVGGQGAPSIPIPQADIIMPQVSQKPEMVPEII ADIPGEDYMEPETSSDVFLDPASLGINDTIPIDIDNISPDPDIDALLDNSSFWDDLLAQSPVPEDIESSSVEGKANGNDVHQIINGWDKAQHMDQLTEQM GLLSSDRKQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Potri.001G138900 [exp]	0	1
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	1.41	0.9129
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126780 [exp]	3.46	0.8981
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	5.09	0.9121
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.001G179100 [exp]	5.47	0.9053
AT4G38220		AQI	aquaporin interactor, Peptidas...		Potri.009G169300 [exp]	6.00	0.8828
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	6.24	0.9088
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.014G118100 [exp]	7.48	0.8798
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126740 [exp]	7.74	0.8904
AT1G54380			spliceosome protein-related (....		Potri.007G124150 [exp]	8.36	0.8928
AT3G61780		EMB1703	embryo defective 1703 (.1)		Potri.014G099100 [exp]	9.79	0.8925

Compare expression of checked genes

Potri.001G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.