Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17760 499 / 1e-180 damaged DNA binding;exodeoxyribonuclease IIIs (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030971 [exp] 491 / 6e-177 AT4G17760 447 / 1e-159 damaged DNA binding;exodeoxyribonuclease IIIs (.1.2) Lus10035367 [exp] 477 / 2e-171 AT4G17760 429 / 1e-152 damaged DNA binding;exodeoxyribonuclease IIIs (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [poplar] [flax] DNA_clamp PF02144 [poplar] [flax] Rad1 Repair protein Rad1/Rec1/Rad17
Representative CDS sequence Show only first row Show all	>Potri.001G139100.1 pacid=42787968 polypeptide=Potri.001G139100.1.p locus=Potri.001G139100 ID=Potri.001G139100.1.v4.1 annot-version=v4.1 ATGAGCTCCTCGGCGATTGAGGCAGATACATCCGATCTGGTGTGCCAACTCGACAACGTCCAAGGCATTGTCGATGCCCTCTCCACCGTCCGATGGAAAC GTCATCAGGACGCAGTTGTTGAATTATCGGAACACGGCATCGTTTTGATTGTTGAAGAAACCGGCTGTCTTCAAGCCAAAGTTTATCTTCAAAAAGAGCT TTTTATTAGATATGAATACACTGCTCAAGGGCGGCCTCGATTTGGATTGAGCTTGGGGCTTTTTGTCGATTGCTTGAACACATTTTCGGTTCCTGGGCAT TCCAGCACTATTGAAATTCGATACCCTGGACCAGATATGCAGCTCCTAATCAAGTCTGCTGATTCACTAGATGACTGCATTTATGCGGAAATCAGGACTA GAATCCCAGAGACAATTTCATGGGACTACAACTTTGAACCCGCAGGAAGCACACCGCTTAGCTTCACTGTCAAGTCTGCAGCGCTGAAGGAAGCTATTGA TGATCTTGAATGGCCAGGATCTTGCATCCAGATCATACTTAAACCAGTACCCCCTTCTGTTACCTTCAGAGGAGAAGGCCATGGAGACTTACAGATAGAC TTCATGTATTATGCAAACACTGATCTGCTAATTGCATTTCACTGTGATCACCAAGTCTCTTACCGGTATAAATACAAGTTCCTTCGAGCCACAACTTCTA ACATGCCCAGTAGTGTTACTAAAGACAACAGAGGAAGCAAGTTGACCATTGGAAGAGGTGGAATGTTGAAGGTTCAGCATCTGGTTTCTGTTGCAAGACC ATCTACTTCACATCAACACATTGATTCTGCTGGCTATCAGCAACCCAGTCGAATTGCTTATATTGAGTTCTTTGTGAAGCCAGAGGAAGATGAAGACACC GTAAATGATTGA
AA sequence Show only first row Show all	>Potri.001G139100.1 pacid=42787968 polypeptide=Potri.001G139100.1.p locus=Potri.001G139100 ID=Potri.001G139100.1.v4.1 annot-version=v4.1 MSSSAIEADTSDLVCQLDNVQGIVDALSTVRWKRHQDAVVELSEHGIVLIVEETGCLQAKVYLQKELFIRYEYTAQGRPRFGLSLGLFVDCLNTFSVPGH SSTIEIRYPGPDMQLLIKSADSLDDCIYAEIRTRIPETISWDYNFEPAGSTPLSFTVKSAALKEAIDDLEWPGSCIQIILKPVPPSVTFRGEGHGDLQID FMYYANTDLLIAFHCDHQVSYRYKYKFLRATTSNMPSSVTKDNRGSKLTIGRGGMLKVQHLVSVARPSTSHQHIDSAGYQQPSRIAYIEFFVKPEEDEDT VND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17760			damaged DNA binding;exodeoxyri...		Potri.001G139100 [exp]	0	1
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	2.00	0.9010
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	4.47	0.8966
					Potri.018G114801 [exp]	5.47	0.8572
AT5G48660			B-cell receptor-associated pro...		Potri.014G191500 [exp]	8.24	0.8504
AT2G24390			AIG2-like (avirulence induced ...		Potri.006G278900 [exp]	9.00	0.8634
AT1G80670		RAE1	RNA export factor 1, Transduci...		Potri.001G048100 [exp]	9.00	0.8393
AT4G22150		PUX3	plant UBX domain-containing pr...		Potri.004G004200 [exp]	9.48	0.8031
AT5G22875			unknown protein		Potri.004G217300 [exp]	9.48	0.8747
AT5G48820		ICK6, KRP3	KIP-RELATED PROTEIN 3, inhibit...		Potri.002G242100 [exp]	16.91	0.7572
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Potri.009G021200 [exp]	18.16	0.8331

Compare expression of checked genes

Potri.001G139100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.