Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01110 275 / 1e-81 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 273 / 2e-80 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G63130 264 / 3e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 261 / 2e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 257 / 9e-76 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G61990 263 / 3e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 254 / 9e-75 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 254 / 9e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G55840 257 / 1e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 246 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G276500 [exp] 293 / 7e-88 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 290 / 1e-84 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 270 / 6e-80 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 263 / 4e-78 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G105700 [exp] 265 / 8e-77 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G250700 [exp] 259 / 8e-75 AT3G54980 781 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 251 / 6e-73 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 251 / 1e-72 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 250 / 1e-72 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000909 [exp] 529 / 9e-178 AT1G74580 270 / 3e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004570 [exp] 509 / 7e-169 AT5G59900 290 / 9e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 300 / 1e-89 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005692 [exp] 272 / 9e-80 AT2G26790 469 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 262 / 2e-76 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 256 / 6e-75 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027914 [exp] 257 / 1e-74 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 255 / 9e-74 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010410 [exp] 256 / 2e-73 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000364 [exp] 252 / 1e-72 AT1G22960 619 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.001G139300.1 pacid=42791026 polypeptide=Potri.001G139300.1.p locus=Potri.001G139300 ID=Potri.001G139300.1.v4.1 annot-version=v4.1 ATGCAACTCCTAGTGCTTAATTTGCAAAGTCTCAATCTGGGTTTAATGGGTATTCGTCGTTATTCAAGAACATGCTTATTGAAACCAGGTTTGCTTCGAA GCCTTCTTACTTGGCGCAGAGGTTGTCTTTATGTACTTTTTTCAGATTTATCTGCTTTGCAATTGGAAGACAATGTGTCTCATTATAGTTCTATGAGTGA AACGGATAGCGACGTTGATAAATTTATGGTACCAAGAATAAAATTTAAGAATCCAAAGAGGTGTGAATTGTCTCGACTTGTTGTGGAGCTTTTAAAGACT TTGAATTGGGAGGTTGCTAGGCAAGTGAAATTCTCAAAATCCGTGAACGTCTATGGATTTTTTTATTCAATTAATGCATTTAGAACCATTGTTCATGTGT TTGCATTGGCGGGCCTGCAGAGGGAAGCACAATATTTGCTCACAGATATTGTTTTTTATTATAAGGAAGAAAATCTTAATGTTTCAGGGTTGTTCTCCAC ATTCTTGGATTCACCAGAGTGTGTGGGAAGATCGGCTACTGTATTTAGTTTACTTATAAAGGTTTTTGCATCGAATAAGATGCTTGCAGATGCGAAAGAT GTTTTTATGCAGGCTAAGAAAATTGGTGTTGAGTTGAATATTTCTTCGTGCAATTTCTTGCTCAAGTGTTTAGCGGAAGGAGATAAACTGGAAGCTGTTA GAAGTTTGTTTGATGATTTGAAGAATTCTGGGCCATCACCAAATGTTTACACCTACACAATTATGATAAATTTTTACTGTAAAGAACGTCATGGGCAGAA TATAGATATGGAACAAGCATCTCTGATCCTGGAAGAAATGGAGAAAAAAGGGGAAAACCCAACAGTTGTAACTTATGGTGTATATATCCATGGTCTCTGT AGAGTTGGTTCAATTGAGGATGCTTGGAACAAGATTCAGGATTTGAGAAGTAGCAACCAGCCTCTCAACATTTATTGTTACAATGCTCTCATTCAGGGGT TTTGCCAAAAAGGCAGACCAGATGAAGCCTTAAAACTTCTGGAAGAAATGAAGGATGAGGGAATATCGCCAGACATTTATAGCTACAGCATTTTAGTCAA TGCCTTTTGCACGGAAGGAGATATTGAATCAGGTATGAATTTAATACAAGAAATGGAGCATTGTAATAAGAAGCCACCCCTTGTTTGTTGCACCTCAGTC CTTATGGGTCTTCGCACTAAAGGACTGGTGAACGATTGTCTCAATTTTTTCCATGAGCTCAGTGCTAAAGGGTACAAGCATGACCTGATATCATACAGCA CCTTAATCCATGGATTCTTAAAGGGGCATAATGTGAAATCTGCTAACAATCTTGTGCACGAGATGAGAAAGAATGGCTTGGTTCCTGATTATATCATTTA TATTAGCCTGATTCGTGAATACTGCAGAAAGGGGTGTTTAAAGGAAGCGCTAAAAAATTTCTATACAATGCTACAGGATGGTCTCCAGCCAGATATTATC ACTTGCAATCATATCGTTGATCAATATTGCAGCAGAGGGCAGTTTGAAGAAGCTTTGATATATATAAACCAAATGAAAGATCAAAATATTCTTCCCAACT CATACACATATAGTGTAATCATAAACTGGCTGTGCAAGTATCAGGCAGTGGAAAAGGCATGGGAAGTTCTTCCTGTAATGTTTAAGGACAACATTTTCCC TTCTGTTATTCATTACACTACCATTATGGATGGATATGCTAAACAGTTTAAAAATCCGATGAAGGCCTGGAAGTTGTATCGAACAATGCCAAAACTTGGG TGCAAACCAGACAATGTGACACTTACAGTTCTTGTTGACATGTTTTCCAAGAGAGGCAAAATGTCTAAAGCACTTAATCTGTTTAAGGAGATGGCTGAAG AGGGTTTGAGCCGAGATGAGTTTGCTTTCACAGCTATTATAGATGGGTACTGTAGAGTTGGAAATGTGAAAAGGGCTTGGTCAATGTATAAGAAAATGAA GAGAAACAATGTCACACCCAATGTGAAGACATATACTTGTCTAGTTGATGGATTTTGCAAGTTAAAACGCTTGGATATGGCTACTATGCTGATTGATGAT ATGAAGAGAAATAGTGTCACACCCGATGTGAAGACATATACTGCTTTAATCGCTGGGTATCAAAGAATTGAAAATATAGATAGAGCTTATGAGGTGTTCG ATGAGATGAAGAAGAAGGGTACCTTGCCAGATCACATTGCCTATCTTACACTTGGACTGGGTGCTGATGTGGTTACAGAAGATTAG
AA sequence Show only first row Show all	>Potri.001G139300.1 pacid=42791026 polypeptide=Potri.001G139300.1.p locus=Potri.001G139300 ID=Potri.001G139300.1.v4.1 annot-version=v4.1 MQLLVLNLQSLNLGLMGIRRYSRTCLLKPGLLRSLLTWRRGCLYVLFSDLSALQLEDNVSHYSSMSETDSDVDKFMVPRIKFKNPKRCELSRLVVELLKT LNWEVARQVKFSKSVNVYGFFYSINAFRTIVHVFALAGLQREAQYLLTDIVFYYKEENLNVSGLFSTFLDSPECVGRSATVFSLLIKVFASNKMLADAKD VFMQAKKIGVELNISSCNFLLKCLAEGDKLEAVRSLFDDLKNSGPSPNVYTYTIMINFYCKERHGQNIDMEQASLILEEMEKKGENPTVVTYGVYIHGLC RVGSIEDAWNKIQDLRSSNQPLNIYCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCNKKPPLVCCTSV LMGLRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDII TCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVIHYTTIMDGYAKQFKNPMKAWKLYRTMPKLG CKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDD MKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDEMKKKGTLPDHIAYLTLGLGADVVTED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G01110			Tetratricopeptide repeat (TPR)...		Potri.001G139300 [exp]	0	1
					Potri.002G154150 [exp]	2.64	0.8949
AT2G33735			Chaperone DnaJ-domain superfam...		Potri.002G103900 [exp]	6.63	0.8175
AT1G66510			AAR2 protein family (.1.2.3)		Potri.017G123900 [exp]	7.61	0.8872
AT4G02550			unknown protein		Potri.003G190900 [exp]	7.74	0.8203
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	8.48	0.8465
					Potri.019G081450 [exp]	8.48	0.8680
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.003G026800 [exp]	12.60	0.7805
AT1G35660			unknown protein		Potri.019G083100 [exp]	13.19	0.8624
AT1G22930			T-complex protein 11 (.1.2)		Potri.013G105300 [exp]	17.74	0.8568
					Potri.004G234200 [exp]	18.33	0.8330

Compare expression of checked genes

Potri.001G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.