Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NHL8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32340 741 / 0 NHL8 NDR1/HIN1-like 8 (.1) AT3G14250 86 / 3e-18 RING/U-box superfamily protein (.1) AT3G27710 72 / 7e-13 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G31760 71 / 1e-12 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT3G53690 69 / 3e-12 RING/U-box superfamily protein (.1) AT2G26135 69 / 3e-12 RING/U-box protein with C6HC-type zinc finger (.1) AT2G31770 69 / 6e-12 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT1G05890 68 / 1e-11 ATARI5, ARI5 ARABIDOPSIS ARIADNE 5, ARIADNE 5, RING/U-box superfamily protein (.1.2) AT2G31510 67 / 2e-11 ATARI7, ARI7 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) AT2G16090 66 / 6e-11 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G187700 [exp] 76 / 7e-15 AT3G14250 242 / 8e-79 RING/U-box superfamily protein (.1) Potri.T124304 [exp] 68 / 1e-11 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 68 / 1e-11 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.018G064400 [exp] 67 / 2e-11 AT3G53690 273 / 1e-89 RING/U-box superfamily protein (.1) Potri.010G180600 [exp] 67 / 2e-11 AT1G65430 860 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.001G037200 [exp] 66 / 2e-11 AT3G14250 240 / 3e-78 RING/U-box superfamily protein (.1) Potri.008G077100 [exp] 66 / 6e-11 AT1G65430 836 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Potri.006G123500 [exp] 64 / 6e-11 AT3G53690 163 / 1e-48 RING/U-box superfamily protein (.1) Potri.002G131200 [exp] 66 / 7e-11 AT1G65430 571 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000908 [exp] 685 / 0 AT1G32340 662 / 0.0 NDR1/HIN1-like 8 (.1) Lus10004569 [exp] 576 / 0 AT1G32340 535 / 0.0 NDR1/HIN1-like 8 (.1) Lus10004568 [exp] 397 / 4e-132 AT1G32340 382 / 5e-126 NDR1/HIN1-like 8 (.1) Lus10013371 [exp] 96 / 2e-20 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10027027 [exp] 69 / 9e-12 AT2G31510 807 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10025566 [exp] 67 / 2e-11 AT2G31510 826 / 0.0 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10042348 [exp] 67 / 3e-11 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Lus10020229 [exp] 65 / 1e-10 AT1G65430 833 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10026856 [exp] 65 / 1e-10 AT1G65430 887 / 0.0 ARABIDOPSIS ARIADNE 8, ARIADNE 8, IBR domain-containing protein (.1) Lus10000412 [exp] 60 / 3e-09 AT3G14250 228 / 9e-73 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF01485 [poplar] [flax] IBR IBR domain, a half RING-finger domain CL0208 [poplar] [flax] UBC PF05773 [poplar] [flax] RWD RWD domain
Representative CDS sequence Show only first row Show all	>Potri.001G139400.2 pacid=42788861 polypeptide=Potri.001G139400.2.p locus=Potri.001G139400 ID=Potri.001G139400.2.v4.1 annot-version=v4.1 ATGAGAAGAGGTAAGCACCGTATCGGGGAGTCCTGGACTGTTAAACGACTTCACGATCATTCCCAACATCAACAAAAACAACAACAACAAGAAGAATCTA ATCTTGAATCACCATCTGTACCATCAGCTTCTTCACAACAACAGTATATCAAGAAATCCGAGCACAAACCCTCAAATTCTCAAGTAGTTTCTTTGAATTC TCCCAAATCTGACCCACCCTCTTCAAGTACTGAAGTGGGTGCTTCTAGTTTTGGTGAGAAAGTGAATGAAAATATGGAAAAACACCTTCATGAAACAAAG AAAGAGGAGATTGAAGAGAAAAAAGAAGAGAGTGAACCGGACAATGGAAATGGGGTTGATGGCGTTGTGACTAGATTGGAAGAATTCTTTTTGGGTGTGG AGGAGCCAGAATTATCTGAGGAGCAGCTAAGGATCAATGATCAGCTACAGGAGGATGAGTTGCTTGCTATGGAGTCGATTTATGGAGACAATACCTTCAT TCTTGAGAGACAGAGAGGTCTAAGATCTTTTCAGATTCATATTCACATTGAAGTTCCTGCTGAATTTACTGTAACTGCAAAGCTATATTCACTTGGTGAT TGTAATGGGAAAAGTGGTAGTTCTGATGAGTTTTCTTACTCATTCGAAGTCCAATATCTTCCACCAATAGTGTTGACCTGCCTATTACCTAAATCATACC CAAGCCACCTACCTCCTTATTTTACCATCTCGGTTCAGTGGTTGGATTCTACTAGTATTTCCCATCTCTGCTCAATGTTGGACTCAATATGGACGGAACA ACCAGGGCTGGAGGTTATATATCAATGGGCTGATTGGCTACAGAATTATTCCCTTTCTTTTCTTGGGATTGATAAAGATATCATTCTTGGACCTTGTGTC ACTAAACATAAAAAAGACAGGCGTGCGATTTCGGGAAGTGTATCCCTGGAGGTTGATGTTCCTTCACTGAGAAGTTACAATGCTGAGCAATGCCATGAGA ACTTCTGCAAAAACTTGCATGAATGTTGTATCTGTTGTGATGAGTATGCAGGCAGCGATTTCATCAGGCTACCATGCCAGCATTTCTTCTGCCCAAAATG CATGAAGAGGTATTCTGACATTCATGTTGCAGAAGGTACTGTGAACAAGCTTCAATGTCCAGATGCAAAATGTGGGGTTATGGTCCCTCCTGGTTTATTG AAACGGTTACTCGGTGATGAAGAATATGAACGATGGGAGTCCTTGATGTTGCAGAAAACACTGGAGTCCATGTCTGATGTTTCCTATTGCCCAAGATGTG AAACACCCTGCATAGAAGATGAAGAACAGCATGCACAATGCTCGAAGTGCTTATATAGCTTTTGCACACTTTGCAGGGAGAGACGCCATTTAGGCGAAGT TTGTATGACACCAGAAATGAAGCTTCAAGTCTTGGAGGAACGTCAAAACTCATCTCACCTCAAAGATGGACAAAAGCATAGAGAGCGCGAGATGATAAAT GAACTTCTTAGTGTCAAGGAAATACTTCGTGATGCTAAGCAATGCCCATCTTGTAAGATGGCAATCTCAAGAACTGAAGGTTGTAACAAGATGGTGTGCA AAAACTGCGGGCAGTTCTTCTGCTATCGTTGTAACAAAGGGATTGATGGATATGACCATTTTAAGGATGGACAGTGTGAACTCTTCCCACAAGAAGAGAT TCAACAATGGGAGGAGAGGATGAATCCCCGCCGGGTTGTGGCTGAGGTTCATGCTGAACTTTTTCCGGATCATGTTAATGCATGTCCCAATTGTGGTCAG TTCAATGTGAAGGTTGGCAATAATAACCACATTCTTTGCTGGTCATGCCAAATGCACTATTGCTACTTGTGCAGAAAGATTGTGAGGCGCGGTTCTCAGC ATTTTGGACCAAAAGGTTGCAAGCAGCACACAGTGGGATAG
AA sequence Show only first row Show all	>Potri.001G139400.2 pacid=42788861 polypeptide=Potri.001G139400.2.p locus=Potri.001G139400 ID=Potri.001G139400.2.v4.1 annot-version=v4.1 MRRGKHRIGESWTVKRLHDHSQHQQKQQQQEESNLESPSVPSASSQQQYIKKSEHKPSNSQVVSLNSPKSDPPSSSTEVGASSFGEKVNENMEKHLHETK KEEIEEKKEESEPDNGNGVDGVVTRLEEFFLGVEEPELSEEQLRINDQLQEDELLAMESIYGDNTFILERQRGLRSFQIHIHIEVPAEFTVTAKLYSLGD CNGKSGSSDEFSYSFEVQYLPPIVLTCLLPKSYPSHLPPYFTISVQWLDSTSISHLCSMLDSIWTEQPGLEVIYQWADWLQNYSLSFLGIDKDIILGPCV TKHKKDRRAISGSVSLEVDVPSLRSYNAEQCHENFCKNLHECCICCDEYAGSDFIRLPCQHFFCPKCMKRYSDIHVAEGTVNKLQCPDAKCGVMVPPGLL KRLLGDEEYERWESLMLQKTLESMSDVSYCPRCETPCIEDEEQHAQCSKCLYSFCTLCRERRHLGEVCMTPEMKLQVLEERQNSSHLKDGQKHREREMIN ELLSVKEILRDAKQCPSCKMAISRTEGCNKMVCKNCGQFFCYRCNKGIDGYDHFKDGQCELFPQEEIQQWEERMNPRRVVAEVHAELFPDHVNACPNCGQ FNVKVGNNNHILCWSCQMHYCYLCRKIVRRGSQHFGPKGCKQHTVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32340		NHL8	NDR1/HIN1-like 8 (.1)		Potri.001G139400 [exp]	0	1	NHL8.1
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.009G115800 [exp]	11.04	0.6711
AT3G59670			unknown protein		Potri.005G144800 [exp]	11.74	0.7377
AT3G22260			Cysteine proteinases superfami...		Potri.006G021700 [exp]	14.38	0.6987
AT3G26000			Ribonuclease inhibitor (.1)		Potri.010G054600 [exp]	14.76	0.7357
AT1G63840			RING/U-box superfamily protein...		Potri.003G130900 [exp]	16.91	0.7000
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Potri.005G128900 [exp]	18.49	0.7026
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Potri.003G097300 [exp]	19.33	0.6900	Pt-XTR4.1
AT4G02210			unknown protein		Potri.002G200600 [exp]	20.04	0.7138
AT1G08315			ARM repeat superfamily protein...		Potri.003G195400 [exp]	26.07	0.7014
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	26.49	0.7099

Compare expression of checked genes

Potri.001G139400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.