Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17770 1430 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 1291 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G23870 1156 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G06410 1154 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G70290 1131 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 1105 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT2G18700 1049 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 462 / 2e-150 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 453 / 2e-145 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT1G17000 425 / 2e-136 ATTPS3 TREHALOSE -6-PHOSPHATASE SYNTHASE S3, trehalose-phosphatase/synthase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094500 [exp] 1671 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1335 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.008G136500 [exp] 1308 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.011G070900 [exp] 1201 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.004G061500 [exp] 1196 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.012G078500 [exp] 1169 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 1159 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.006G175500 [exp] 1061 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.018G097700 [exp] 1057 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034585 [exp] 1329 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1313 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1185 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10007311 [exp] 1181 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029258 [exp] 1175 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10005425 [exp] 1174 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 1171 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10030635 [exp] 1164 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10012990 [exp] 1147 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Lus10029175 [exp] 1147 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00982 [poplar] [flax] Glyco_transf_20 Glycosyltransferase family 20 CL0137 [poplar] [flax] HAD PF02358 [poplar] [flax] Trehalose_PPase Trehalose-phosphatase
Representative CDS sequence Show only first row Show all	>Potri.001G139500.4 pacid=42791421 polypeptide=Potri.001G139500.4.p locus=Potri.001G139500 ID=Potri.001G139500.4.v4.1 annot-version=v4.1 ATGGTTTCAAGGTCATATTCCAACCTCTTAGATCTTGCTTCTGGTGATGCTCCAATTCCAAGTTTTGGTCGTGAGAGGAAGAGGTTTCCTCGAGTGGCAA CTGTTGCTGGAATACTGACTGATCTAGATGATGAAAACAATGTTGGCTCTGATTCCCCCTCTTCTGTCTCTCTAGGACGGATGATTATTGTGGGGAACCA GCTTCCCCTTCGGGCACATCGAAGTCCAGATAGCAGTGGAGGGTGGTGCTTTAGCTGGGATGAGGACTCACTTCTCTTACAACTCAAAGATGGTCTTGGA GAAGGTGTTGAAGTTATCTATGTTGGTTCTCTTAAAGAAGAGATTGAACCTAGTGAGCAAGACGATGTAGCCCAAACATTGCTTGAAACTTTTAAATGTG TCCCGGCATTTATCCCTCCTGACCTTTTTACTAAATTTTATCATGGATTCTGTAAACAACATCTATGGCCTTTATTTCACTACATGCTCCCTCTATCACC GGATCTTGGTGGCCGGTTTGATAGGTCCCTTTGGCAGGCTTATGTTTCCGTGAACAAAATATTTGCAGACAAAGTAAAGGAAGTGATTAGCCCTGAGGAT GATTATGTGTGGGTCCATGACTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGATATTTAATAGGGTGAAGCTTGGGTTCTTTCTTCATAGTCCAT TCCCATCATCTGAAATATATAGAACACTTCCTGTAAGGGATGAACTTCTGAGAGCACTTCTGAACTCTGACCTTATTGGTTTTCATACATTTGATTATGC AAGGCATTTCCTCTCTTGTTGCAGTAGAATGCTCGGTCTTTCTTATCAATCCAAGCGAGGTTACATAGGGCTTGAGTATTTTGGTCGGACAGTCAGCATC AAGATTCTCCCTGTTGGGATTCATATTGGTCAGCTCCAATCCGTGCTCAATCTTCCCGAGACAGAATCTAAGGTTGCAGAGCTACATGACCAGTTTAGGG GTCAAGCTGTAATGCTAGGGGTTGATGACATGGACATCTTTAAAGGAATCAGCTTGAAACTTTTGGCAATGGAAGAGTTACTCACACAACATCCTAATAA GAGGGGTGAAGTTGTTTTGGTTCAAATTGCAAACCCAGCAAGAGGCCGAGGAAGGGAAGTACAGGAGGTCCAGTCTGAAACTAAAGCTGCAGTGAGGAGG ATCAATGAGGCATTTGGAAGTCCAGGATATACTCCAGTGGTTTTGATTGACAGGCCACTTCAGTTTTATGAGCGCATTGCTTATTATGCAATTGCAGAGT GTTGTCTTGTTACAGCAGTGAGGGATGGGATGAATCTGATACCCTATGAATATATCATATGTCGACAAGGAAATGAGAAGCTGGATGAGACATTAGGACG GGATCCATCAGCCCCAAGAAAGAGCATGCTGGTTCTTTCGGAGTTTATTGGATGCTCCCCATCACTGAGTGGTGCAATCCGAGTAAATCCATGGAATATT GATGCTGTGGCTGAAGCTATGAATTCTGCCCTGGTAGTCCCTGAGCCAGAAAAACAGATGCGACATGAGAAGCACCATAGGTATGTGAGTACGCATGATG TTGCATATTGGGCACGTAGTTTCTTGCAGGATCTTGAAAGGGCATGTAGGGATCATGTGAAGAGGAGGTGCTGGGGATTTGGTTTTGGTTTAGGTTTTCG AGTCATTGCTTTGGATCCAAATTTCAGAAAAATTTCAGTTGAACATATTGTTTCTGCTTATAAGAGGACCAAGAACCGAGTGATTCTTTTGGATTATGAT GGTACTATGACGCTGCCAAGTTCAACCAGGACTCCAAACATGGAGACTGTTGGAGTCTTGAACAGCTTGTGTACAGACCCTAAGAATGTTGTTTTCCTTG TTAGTGGGAGAGACAGGGAGACTCTTACCGAATGGTTTTCTTCCTGTGAAAAGCTTGGCATTGCTGCAGAACATGGTTATTTCGTGAGGACCAATCATGA TGCAGAATGGGAAACATGTGTATCCGTACCAGATTTTGATTGGAAACGTATTGCTGAGCCAGTAATGAAACTATACACTGAAACAACTGATGGTTCTGCC ATTGAGACGAAAGAGAGTTCACTTGCTTGGAATTACCAGTACGCAGATCCAGATTTTGGTTCGTGCCAGGCAAAGGAGCTTCTAGATCACCTGGAAAGTG TTCTTGTCAATGAGCCAGTTACTGTCAAGAGCGGTCAACACACTGTAGAAGTTAAACCCCAGGGTGTTAGAAAAGGTCTTGTGGCCGAACGCCTCCTAGA TACAATGAAACTGAAGGGAAAGCTTCCTGACTTTGTTCTCTGCGTTGGGGATGACCAGTCTGATGAGGACATGTTTGAGGTGATATTGAGTGCAAGATCT GGCCCCTCTCTTTCCCCAGTTGCTGAAGTGTTTGCATGCACTGTTGGCCGAAAGCCCAGCAAGGCCAAGTACTACTTGGAAGACACTTCTGAGATTTTGA GAATGCTACAAGGTCTTGCCAGTGCTTTGGAGCAGGATGCCAGAAGTGCCCCCCAATCCTCTCAGCAGGTGATTATTGACAGAGAGTAA
AA sequence Show only first row Show all	>Potri.001G139500.4 pacid=42791421 polypeptide=Potri.001G139500.4.p locus=Potri.001G139500 ID=Potri.001G139500.4.v4.1 annot-version=v4.1 MVSRSYSNLLDLASGDAPIPSFGRERKRFPRVATVAGILTDLDDENNVGSDSPSSVSLGRMIIVGNQLPLRAHRSPDSSGGWCFSWDEDSLLLQLKDGLG EGVEVIYVGSLKEEIEPSEQDDVAQTLLETFKCVPAFIPPDLFTKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYVSVNKIFADKVKEVISPED DYVWVHDYHLMVLPTFLRKIFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYFGRTVSI KILPVGIHIGQLQSVLNLPETESKVAELHDQFRGQAVMLGVDDMDIFKGISLKLLAMEELLTQHPNKRGEVVLVQIANPARGRGREVQEVQSETKAAVRR INEAFGSPGYTPVVLIDRPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDETLGRDPSAPRKSMLVLSEFIGCSPSLSGAIRVNPWNI DAVAEAMNSALVVPEPEKQMRHEKHHRYVSTHDVAYWARSFLQDLERACRDHVKRRCWGFGFGLGFRVIALDPNFRKISVEHIVSAYKRTKNRVILLDYD GTMTLPSSTRTPNMETVGVLNSLCTDPKNVVFLVSGRDRETLTEWFSSCEKLGIAAEHGYFVRTNHDAEWETCVSVPDFDWKRIAEPVMKLYTETTDGSA IETKESSLAWNYQYADPDFGSCQAKELLDHLESVLVNEPVTVKSGQHTVEVKPQGVRKGLVAERLLDTMKLKGKLPDFVLCVGDDQSDEDMFEVILSARS GPSLSPVAEVFACTVGRKPSKAKYYLEDTSEILRMLQGLASALEQDARSAPQSSQQVIIDRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.001G139500 [exp]	0	1
AT4G28100			unknown protein		Potri.013G148700 [exp]	1.00	0.7583
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G080000 [exp]	2.44	0.7052
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	13.07	0.6921
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	16.85	0.6737
AT3G06150			unknown protein		Potri.010G030900 [exp]	23.02	0.6416
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Potri.017G067000 [exp]	25.92	0.5456	CNGC16.1
AT4G16400			unknown protein		Potri.006G017900 [exp]	27.49	0.6547
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Potri.014G079900 [exp]	47.32	0.5740
AT2G33360			Protein of unknown function (D...		Potri.010G066200 [exp]	48.50	0.6323
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.005G005800 [exp]	55.89	0.6397

Compare expression of checked genes

Potri.001G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.