Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25960 1873 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 1815 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT3G28860 1233 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G27940 1159 / 0 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1) AT1G28010 1140 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT2G36910 1135 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G62150 1009 / 0 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 1004 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT4G01830 1002 / 0 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT1G02520 1000 / 0 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094400 [exp] 2052 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 2033 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G081100 [exp] 1231 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.002G019600 [exp] 1186 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.016G093600 [exp] 1143 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 1135 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.014G113500 [exp] 1016 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.001G354900 [exp] 1012 / 0 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.002G187500 [exp] 1008 / 0 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004571 [exp] 1679 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10030674 [exp] 1219 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1212 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10023929 [exp] 1157 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10017271 [exp] 1154 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 1139 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10010067 [exp] 1047 / 0 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009988 [exp] 1021 / 0 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10038049 [exp] 1021 / 0 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009989 [exp] 1006 / 0 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.001G139700.1 pacid=42792185 polypeptide=Potri.001G139700.1.p locus=Potri.001G139700 ID=Potri.001G139700.1.v4.1 annot-version=v4.1 ATGATTTCAATTTCCGGAAATGAAGACATCGATAATATGATTATGGACAAGATCCAGACGAAGAAAGAGGAAGCTGCAGGAAAGAAGCAACAGAAAGTTC CTTTGCTAAAACTTTTCGCATTTGCCGATTTTTACGACTTCGTGTTGATGGGGCTGGGATCAATCGGTGCTTGTATTCATGGAGCTGCAGTGCCTGTCTT CTTCATTTACTTTGGAAAATTGATAAATATCATTGGACTGGCTTATCTCTTTCCTCAACAAACTTCTCACAAAGTTGCCAAGTACTCGTTGGATTTTCTA TATCTCAGTGTGGCTATGTTATTTTCGTCATGGACGGAGGTGGCATGTTGGATGCATACTGGAGAACGACAGGCAGCAAAGATGAGAATGGCCTACTTGG ATTCAATGTTGAGTCAAGACATAAGCGTATTCGACACTGAAACATCCACCGCGGAGGTCATAACCTCAATTACAAGCGACATTCTTGTTGTGCAAGATGC CATTTCCGAGAAGGTAGGGAAATTGATGCACTATATAAGCCGATTTCTAGTTGGCTTTATTATTGGATTTATCAGGGTATGGCAAATCAGTTTGGTGACA TTGTCTGTGCTCCCTTTAATCGCTCTTGCTGGTGGCTTCTATGCATATATAGCAACCGGCCTTATTATTAACGTTCGCAAATCTTATGTCGAGGCTAGTC AAATCGCTCAGGAGGTAATTGGTAATATCAGAACAGTGCAATCATTTACAGGAGAAGAAAGGGCAGTGAGATCATATAAAGAAGCTCTAAGGAATACCTA CAAGCACGGAAGAAAAGCTGGTTTGACGAAGGGTCTTGGAATGGGAACCCTGCAGAGTCTTCTATTCCTCTCGTGGGCTTTACTTGTTTGGTATACTAGC ATAGTTGTTCATAAGAACATTGCCAATGGTGGTGACTCCTTCACCACCATGCTCAATGTCCTTATTGCTGGAGTATCCCTGGGAATGGCAGCACCAGATA TTTCTGCATTTTTTCGAGCCATGGCAGCAGCTTACCCCATTTTTGAGATGATTGAGAAGAACACAGTAAGCAAATCAAGCTCAAAAACTGGCCAAAAACT AGGAAAATTGGAGGGTCACATCGAATTCAGGGACGTATGTTTTTGCTACCCATCACGTCCTGACGTAGTTATTTTCAATAAATTTCGTCTTGATATACCT TCTGGGAAGATTGTAGCTCTTGTCGGAGGAAGTGGATCAGGAAAGAGCACGGTTATATCTTTGATCGAACGCTTCTATGAGCCTCTATCCGGAAAGATAC TGTTAGATGGGAATGATATCAGGGACCTTGACCTCAAGTGGCTACGGCAACAAATTGGACTAGTAAATCAGGAGCCTGCCCTTTTTGCAACAAGTATTAG AGAGAACATTCTCTACGGAAAAACTGATGCAACCCTTGATGAACTTACAAGTGCTGCTAAACTTTCAGAAGCTATGTCCTTTATCAACAACCTCCCTGAT GGATTGGAAACTCAGGTTGGTGAGAGAGGAATACAACTATCAGGTGGCCAAAAACAAAGGATTGCAATATCACGAGCAATAATAAAGAATCCTTCAATTC TTTTACTAGATGAAGCTACAAGTGCCCTAGATGCTGAGTCTGAGAAAAGTGTGCAAGAGGCACTTAATCATGCCATGGTGGGAAGAACTACTGTAATTGT GGCTCATCGTCTTTCAACCATTAGGAACGCAGATGTAACTGTTGTTCTTCAGGAAGGGAAGATAGTGGAAATCGGAAGCCATGAAAAGCTCATCTCAAAT CCAAATAGTACATACGCATCACTTGTTCACCTTCAGGAGGAAGCTTCTGTGCAATGCCACTCCTCTGTAAGTCCTTCCGTGGGATGGCCACTCAGACAGT ATTCAGGAGGTTTGTCCTACACAAGGACAAGCTTTAGTGCGAGTTTTCGTTCTGAAAAAGATTTACGTAGTCATGCTGGTGTTGATACAATGGAGCCTAT CAAGCCAAAACCTGTTTCACTGAAAAGACTGTATTCCATGCTTGGCCCTGATTGGATTTATGGCGTTGTTGGAACCATTAGTGCCTTTGTTGCTGGAGCG CTGCTGCCACTTTTTGCATTAGGAATGGCTCAATCTCTTGTAGCCTATTACATGGACTGGCACACAACCTGTCAAGAGATCAGAAAGATTTCAATCCTAT TTTGCTGTGGTGCAGTAATTAGCATTTTCGCCTACGCCATTATGCATCTGTGTTTTGGAATCATGGGAGAGCGACTTGCTTTTCGTGTGAGAGAAATTAT GTTTTCTGCCATTCTGAGGAACGAAATTGGATGGTTTGATGACTTGAACAATACCAGTCCAATGCTCACAGGACGTCTACAGAGTGATGCAATTTTGTTG CAAACAATAGTTGTTGATCGCACAACAATTCTCTTACACAATGTTGGTCTGGTTGTCACCTCATTTATCATTGCTTTCATCTTAAACTGGAGGATCACAC TTGTTGTCATAGCCACATATCCACTCCTGATCAGTGGTCACATCAGCGAGAAACTCTTTATGCAAGGCTTTGGTGGCAACTTGAGCAAAGCATATTTAAA GGCTAACATGCTGGCTGGAGAGGCTGTCAGCAACATCCGCACTGTTGCAGCATTTTCTGCTGAAGAGAAGATCCTTCATCTTTATGCCCATGAGCTTGTG GAACCTTCCAACCGCTCATTTCTTCGTGGTCAGATCGCAGGAATATTCTATGGTGTATGCCAATTCTTCATATTCTCATCTTATGCGCTTGCACTATGGT ATGGTTCTGTTTTGATGGGAAAGGAGATTTCTGGATTTAAATCTATCATGAAGTCATTTTTTGTTTTGATTACAACTGCAATAGCCATGGGAGAAACTCT GGCGATGGCTCCAGATATTCTGAAAGGGAACCAAATAGCAGCGTCTGTCTTCGAGCTGCTGGACCGCAAGACACAGGTGATTGGGGATGCTGGAGAAGAG TTGAAAAATGTGGAAGGTACAATTGAGCTAAGAGGGGTCCAATTCAGCTATCCTTCTAGACCAGATACATTGATTTTCAAGGACTTCGATTTCAGAGTGT GTTCAGGCAAGAGTATGGCTTTAGTGGGCCAAAGTGGCTCCGGTAAAAGTTCTGTTCTTGCTCTGATTCTTCGTTTCTATGATCCAACAGCAGGAAAAGT GATGATTGATGGCATAGACATCAAGAAACTGAAGCTGAAATTCCTTCGGAAACACATTGGTCTTGTCCAACAAGAGCCACCTCTTTTTGCCACCTCAATC TATGAGAACATCTTATATGGAAAAGAAGGGGCCTTGGAAGGAGAAGTAATTGAAGCGGCTAAGCTTGCTAATGCCCATAGTTTCATCAGCGCCCTTCCCG AGGGCTACTCAACAAAGGTTGGTGAACGAGGGGTGCAACTATCTGGTGGCCAGAAGCAAAGAGTGGCCATTGCCCGAGCAGTTCTGAAAAACCCAGAAAT CTTGCTATTAGACGAGGCGACCAGTGCTCTAGACGTGGAGTCAGAGCGTGTCGTGCAACAAGCTCTAGATAGATTGATGACAAACCGAACAACAGTCATA GTAGCACACAGGTTGTCCACTATAAAGAATGCTGATGAAATATCAGTTATACAAGGCGGGAAGATAATACAGCAAGGCACCCATTCCAATCTTATAAACA ACATGGAAGGAGCATATTTTAAGTTAGTAAGACTTCAGCAGAGAGAATAA
AA sequence Show only first row Show all	>Potri.001G139700.1 pacid=42792185 polypeptide=Potri.001G139700.1.p locus=Potri.001G139700 ID=Potri.001G139700.1.v4.1 annot-version=v4.1 MISISGNEDIDNMIMDKIQTKKEEAAGKKQQKVPLLKLFAFADFYDFVLMGLGSIGACIHGAAVPVFFIYFGKLINIIGLAYLFPQQTSHKVAKYSLDFL YLSVAMLFSSWTEVACWMHTGERQAAKMRMAYLDSMLSQDISVFDTETSTAEVITSITSDILVVQDAISEKVGKLMHYISRFLVGFIIGFIRVWQISLVT LSVLPLIALAGGFYAYIATGLIINVRKSYVEASQIAQEVIGNIRTVQSFTGEERAVRSYKEALRNTYKHGRKAGLTKGLGMGTLQSLLFLSWALLVWYTS IVVHKNIANGGDSFTTMLNVLIAGVSLGMAAPDISAFFRAMAAAYPIFEMIEKNTVSKSSSKTGQKLGKLEGHIEFRDVCFCYPSRPDVVIFNKFRLDIP SGKIVALVGGSGSGKSTVISLIERFYEPLSGKILLDGNDIRDLDLKWLRQQIGLVNQEPALFATSIRENILYGKTDATLDELTSAAKLSEAMSFINNLPD GLETQVGERGIQLSGGQKQRIAISRAIIKNPSILLLDEATSALDAESEKSVQEALNHAMVGRTTVIVAHRLSTIRNADVTVVLQEGKIVEIGSHEKLISN PNSTYASLVHLQEEASVQCHSSVSPSVGWPLRQYSGGLSYTRTSFSASFRSEKDLRSHAGVDTMEPIKPKPVSLKRLYSMLGPDWIYGVVGTISAFVAGA LLPLFALGMAQSLVAYYMDWHTTCQEIRKISILFCCGAVISIFAYAIMHLCFGIMGERLAFRVREIMFSAILRNEIGWFDDLNNTSPMLTGRLQSDAILL QTIVVDRTTILLHNVGLVVTSFIIAFILNWRITLVVIATYPLLISGHISEKLFMQGFGGNLSKAYLKANMLAGEAVSNIRTVAAFSAEEKILHLYAHELV EPSNRSFLRGQIAGIFYGVCQFFIFSSYALALWYGSVLMGKEISGFKSIMKSFFVLITTAIAMGETLAMAPDILKGNQIAASVFELLDRKTQVIGDAGEE LKNVEGTIELRGVQFSYPSRPDTLIFKDFDFRVCSGKSMALVGQSGSGKSSVLALILRFYDPTAGKVMIDGIDIKKLKLKFLRKHIGLVQQEPPLFATSI YENILYGKEGALEGEVIEAAKLANAHSFISALPEGYSTKVGERGVQLSGGQKQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMTNRTTVI VAHRLSTIKNADEISVIQGGKIIQQGTHSNLINNMEGAYFKLVRLQQRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Potri.001G139700 [exp]	0	1
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Potri.010G053500 [exp]	6.32	0.7917
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Potri.011G042100 [exp]	12.36	0.6748
AT3G14172			unknown protein		Potri.013G091900 [exp]	14.42	0.7228
AT3G56160			Sodium Bile acid symporter fam...		Potri.008G021600 [exp]	21.90	0.7751
AT1G54820			Protein kinase superfamily pro...		Potri.013G025700 [exp]	23.83	0.8133
AT2G03810			18S pre-ribosomal assembly pro...		Potri.015G048400 [exp]	32.21	0.8052
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.009G051200 [exp]	37.14	0.8055
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.003G151750 [exp]	40.98	0.7144
AT3G03770			Leucine-rich repeat protein ki...		Potri.019G039000 [exp]	63.87	0.7444
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G172200 [exp]	68.00	0.7736

Compare expression of checked genes

Potri.001G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.