Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17790 379 / 2e-134 SNARE associated Golgi protein family (.1) AT1G71940 330 / 6e-115 SNARE associated Golgi protein family (.1.2) AT4G09580 311 / 4e-107 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094000 [exp] 452 / 2e-163 AT4G17790 378 / 8e-134 SNARE associated Golgi protein family (.1) Potri.013G113000 [exp] 329 / 2e-114 AT4G09580 454 / 5e-163 SNARE associated Golgi protein family (.1) Potri.019G083500 [exp] 327 / 3e-113 AT1G71940 460 / 1e-165 SNARE associated Golgi protein family (.1.2) Potri.008G202600 [exp] 45 / 2e-05 AT5G19070 338 / 1e-117 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 43 / 8e-05 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004564 [exp] 388 / 9e-138 AT4G17790 388 / 1e-137 SNARE associated Golgi protein family (.1) Lus10000905 [exp] 387 / 1e-137 AT4G17790 387 / 2e-137 SNARE associated Golgi protein family (.1) Lus10017913 [exp] 320 / 1e-110 AT4G09580 442 / 2e-158 SNARE associated Golgi protein family (.1) Lus10014818 [exp] 281 / 6e-96 AT1G71940 374 / 2e-132 SNARE associated Golgi protein family (.1.2) Lus10034028 [exp] 50 / 5e-07 AT5G19070 363 / 3e-127 SNARE associated Golgi protein family (.1) Lus10004421 [exp] 49 / 1e-06 AT5G19070 361 / 2e-126 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 47 / 5e-06 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10028016 [exp] 47 / 6e-06 AT1G03260 328 / 2e-113 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.001G140200.1 pacid=42790615 polypeptide=Potri.001G140200.1.p locus=Potri.001G140200 ID=Potri.001G140200.1.v4.1 annot-version=v4.1 ATGAAGGGAAAAGGAGGACATGTGGGATCCAGATTTCCTTTGAGCTCTTGGGAGGTTGCTGCTGCTTCCTCTGTTCTGTTGGGATTCGTTCTGGGTCTTT TGGGGGTTTACCTAACCATGCCTGAATCTGATTACAGTTTCCTCAAGCTCCCTCGCACCCTTGAAGATCTTCAAATCCTCAGGGATCACCTTGAAACTTA TACAAGTGACTACACTGCACAAGTCCTGGTGGGATACTGTGTGGTCTACATTTTCATGCAGACTTTTATGATCCCTGGCACTGTTTTTATGTCATTGCTT GCTGGGGCTCTTTTTGGAGTATTTAAAGGTGTAGCTTTGGTGGTGTTCACTGCCACTGCTGGTGCTTCTTCTTGCTATTTCCTGTCAAAATTAATCGGGC GCCCTCTTGTCTTCAGTCTCTGGCCTGACAAGCTTAGTTTCTTCCAAGAGCAGGTGGCTAGAAGAAGAGGAGGATTGTTGAACTACATGCTTTTCTTAAG ACTAACCCCAACTTTACCAAATACATTTATTAATGTTGCTTCACCAATAGTTGATGTTCCTTATCACATTTTCTTCCTGGCAACCTTGATCGGACTTGTT CCTGCTGCTTATGTCACTGTTAAGGCTGGAATAGCTCTTGGAGAATTGCAATCTATAGGCGATCTTTATGACTTCAACTCCATTGCCACTCTATTCCTCA TCGGGATTGTTTCTATTACCCCTACATTAATAAGCAAGAGTAAATCATAG
AA sequence Show only first row Show all	>Potri.001G140200.1 pacid=42790615 polypeptide=Potri.001G140200.1.p locus=Potri.001G140200 ID=Potri.001G140200.1.v4.1 annot-version=v4.1 MKGKGGHVGSRFPLSSWEVAAASSVLLGFVLGLLGVYLTMPESDYSFLKLPRTLEDLQILRDHLETYTSDYTAQVLVGYCVVYIFMQTFMIPGTVFMSLL AGALFGVFKGVALVVFTATAGASSCYFLSKLIGRPLVFSLWPDKLSFFQEQVARRRGGLLNYMLFLRLTPTLPNTFINVASPIVDVPYHIFFLATLIGLV PAAYVTVKAGIALGELQSIGDLYDFNSIATLFLIGIVSITPTLISKSKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17790			SNARE associated Golgi protein...		Potri.001G140200 [exp]	0	1
AT1G60420			DC1 domain-containing protein ...		Potri.002G017200 [exp]	1.41	0.9082
AT5G24080			Protein kinase superfamily pro...		Potri.015G026300 [exp]	2.82	0.8878
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.006G109600 [exp]	4.58	0.8523	Pt-ATPK19.1
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	4.89	0.8769	Pt-ATHB.5
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Potri.011G041600 [exp]	6.92	0.8672
AT1G72510			Protein of unknown function (D...		Potri.006G219100 [exp]	7.54	0.8785
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Potri.017G036700 [exp]	9.21	0.8743	Pt-RFS.3
AT4G18170	WRKY	ATWRKY28, WRKY2...	WRKY DNA-binding protein 28 (....		Potri.005G203200 [exp]	12.00	0.8347
AT1G45249	bZIP	AtABF2, ATAREB1...	ABSCISIC ACID RESPONSIVE ELEME...		Potri.002G125400 [exp]	15.90	0.8050	ABF2.2
AT5G47560		ATTDT, ATSDAT	tonoplast dicarboxylate transp...		Potri.006G013900 [exp]	16.12	0.8116

Compare expression of checked genes

Potri.001G140200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.