Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46840 365 / 1e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G14100 61 / 7e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17370 55 / 7e-08 UBP1B oligouridylate binding protein 1B (.1.2) AT5G50250 51 / 6e-07 CP31B chloroplast RNA-binding protein 31B (.1) AT5G09880 52 / 1e-06 Splicing factor, CC1-like (.1) AT1G17640 51 / 1e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 50 / 2e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G24770 48 / 9e-06 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT2G37220 48 / 1e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G00830 47 / 2e-05 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093900 [exp] 716 / 0 AT5G46840 364 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G148100 [exp] 51 / 1e-06 AT5G09880 553 / 0.0 Splicing factor, CC1-like (.1) Potri.016G090700 [exp] 50 / 1e-06 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 48 / 2e-05 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.006G127200 [exp] 46 / 3e-05 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G344900 [exp] 45 / 6e-05 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G055400 [exp] 45 / 6e-05 AT3G15010 303 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G104500 [exp] 45 / 8e-05 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.009G105300 [exp] 45 / 8e-05 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004563 [exp] 376 / 5e-126 AT5G46840 337 / 6e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000904 [exp] 357 / 2e-120 AT5G46840 305 / 9e-102 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10041952 [exp] 54 / 2e-07 AT5G50250 272 / 2e-90 chloroplast RNA-binding protein 31B (.1) Lus10029372 [exp] 50 / 2e-06 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10017962 [exp] 47 / 1e-05 AT5G50250 274 / 5e-92 chloroplast RNA-binding protein 31B (.1) Lus10000826 [exp] 48 / 2e-05 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10013591 [exp] 47 / 3e-05 AT3G52380 130 / 4e-35 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10014814 [exp] 47 / 3e-05 AT1G71800 350 / 2e-116 cleavage stimulating factor 64 (.1) Lus10017923 [exp] 47 / 4e-05 AT1G71800 306 / 4e-98 cleavage stimulating factor 64 (.1) Lus10041602 [exp] 45 / 5e-05 AT3G52150 263 / 2e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G140300.1 pacid=42791664 polypeptide=Potri.001G140300.1.p locus=Potri.001G140300 ID=Potri.001G140300.1.v4.1 annot-version=v4.1 ATGGGCAAAAAGAAACACAAGGAACCAGACACCTCCACAGCCCAGAACCACACGGCTTCTGCTCTTTCCGATGTCTTCCAAACCCTATTCAGCGGCGCCG ATCAAACCGCCTCTACCTCCTCCCTTTTCTCTGATAGCAACCCTTTCAAAAGAAAACCCGAAGACCCAAAATCCAACGAAAACCCTAGCACCGATGTCGA CACCCAAAAACCCAACTTCTATGAAACTACAGAGAAACTAAAAAAGGTGAAAACTGAAAATCCCAATTTGGGTTTTGAGCCAAAAGAAGAGGAAACGTTA AGGAGGAGAAAGAAGAGAAAAAGAGACGATCTTGAGAGAGAATATGAGGCTAAAAAGTATGGTCCAGTGGTAGATAATGAGGAAAATGCGAGTGTTGTTG TTGGGGCTAAGAGGAAAAACACTGATGATGCTGCGGATGTGCTGGTTTCAAAGGAGAGTGAAGGGTTTGATGATGAGAGCAAGTTGTTGAGGACTGTGTT TGTTGGGAATTTGCCTTTGAAGGTGAAGAAGAAGACACTTATTAAGGAATTTAGTAAGTTTGGGGACGTTGAGTCTGTGAGGATCCGGTCCGTGCCAATT GCTGAATCCAAGATACCGAGGAAGGGAGCTATTTTGTTGAAGAAATTTAATGATAATGTTGACAGTGTTCATGCATATGTTGTTTTCAAGAATGAGCAAT CGGCAGAGGCATCTCTCTCCCATAATATGGCTGTGGTTGGAGGCAATCACATTCGTGTAGATAGGGCATGCCCACCTCGCAAGAAGTTAAAGGGGTCAGA TGCTCCCCTTTATGATAACAAGAGGACAGTTTTTGTTGGTAACCTCCCCTTTGATGTGAAGGATGAAGAACTTTATCAGCTTTTCACTGGTATTAAAGAT CTTGCATCCAGTATTGAAGCTGTTCGAGTAATTAGAGATCCTCATGTAGGTCTGGGAAAGGGCATCGCCTATGTGCTGTTTAAAACAAGGGAAGCTGCGA ATTTGGTGATCAAGAAACGGAATTTGAAGCTTCGTGATAGAGAGCTGAGACTATCTCATGCCAGACAGGATTCTACCCCCTCCAAGAGAAAGAACTCATT TGCTGAAGAGACAGCTAATTCACCAAACAAGAGGTTGGCACCAGATTCAAGGGCTCCTTACCATAACAACAGGCCAGATAGGAAGGCTGCCAAATCCTAC CAGGGCTTGCGTGCTAGCAAATCTGGTGTGGAGAAGAAAGTCCATGCTCCTGCACATTCAAAGCGAGATGTAGCACCTAAGATGAAATCTAAGCCACGAG AAGAAAAGCATCAGGGGAAAAGACCCGCTGTTGCTAAAAGAAAGGCAAAAGCTACAGCACTCAAGGATGGTGGTGCTTTAGAACCAGCCAGGCAAAAACG CAAGCTCGATAGCCGGACCCCAGACAGTTCCAACAGAAAGAAAAAGGCCAGGAAATTTAGGTAG
AA sequence Show only first row Show all	>Potri.001G140300.1 pacid=42791664 polypeptide=Potri.001G140300.1.p locus=Potri.001G140300 ID=Potri.001G140300.1.v4.1 annot-version=v4.1 MGKKKHKEPDTSTAQNHTASALSDVFQTLFSGADQTASTSSLFSDSNPFKRKPEDPKSNENPSTDVDTQKPNFYETTEKLKKVKTENPNLGFEPKEEETL RRRKKRKRDDLEREYEAKKYGPVVDNEENASVVVGAKRKNTDDAADVLVSKESEGFDDESKLLRTVFVGNLPLKVKKKTLIKEFSKFGDVESVRIRSVPI AESKIPRKGAILLKKFNDNVDSVHAYVVFKNEQSAEASLSHNMAVVGGNHIRVDRACPPRKKLKGSDAPLYDNKRTVFVGNLPFDVKDEELYQLFTGIKD LASSIEAVRVIRDPHVGLGKGIAYVLFKTREAANLVIKKRNLKLRDRELRLSHARQDSTPSKRKNSFAEETANSPNKRLAPDSRAPYHNNRPDRKAAKSY QGLRASKSGVEKKVHAPAHSKRDVAPKMKSKPREEKHQGKRPAVAKRKAKATALKDGGALEPARQKRKLDSRTPDSSNRKKKARKFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.001G140300 [exp]	0	1
AT1G10580			Transducin/WD40 repeat-like su...		Potri.008G172800 [exp]	3.74	0.9018
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.001G357800 [exp]	3.87	0.8784
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.012G059300 [exp]	6.92	0.8746
AT2G44200			CBF1-interacting co-repressor ...		Potri.006G000200 [exp]	9.59	0.8784
AT4G10760		MTA, EMB1706	EMBRYO DEFECTIVE 1706, mRNAade...		Potri.001G085200 [exp]	9.89	0.8774
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	10.48	0.8781
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	12.96	0.8779
AT1G03280			Transcription factor TFIIE, al...		Potri.010G102000 [exp]	13.49	0.8626
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.001G196500 [exp]	14.14	0.8367
AT4G01000			Ubiquitin-like superfamily pro...		Potri.002G170200 [exp]	15.00	0.8138

Compare expression of checked genes

Potri.001G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.