Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35880 54 / 7e-08 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 48 / 4e-06 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT3G23090 45 / 3e-05 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G28646 44 / 5e-05 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G54460 44 / 0.0001 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042800 [exp] 50 / 1e-06 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.016G066600 [exp] 48 / 5e-06 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G200400 [exp] 48 / 6e-06 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.018G027500 [exp] 45 / 3e-05 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G254400 [exp] 45 / 6e-05 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.008G162800 [exp] 43 / 0.0002 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002915 [exp] 59 / 2e-09 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10029355 [exp] 55 / 5e-08 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10016193 [exp] 53 / 1e-07 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002012 [exp] 48 / 7e-06 AT4G32330 141 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G140400.1 pacid=42789071 polypeptide=Potri.001G140400.1.p locus=Potri.001G140400 ID=Potri.001G140400.1.v4.1 annot-version=v4.1 ATGTTACGTGCAGTTATGGAAGAAAAGGTAGCAGCTGAACAAGTACATAAACAAGAACAGATTAATGAAGAGGAGTCCGGTGTTGTACAAAACTATGTAA GAGAAGTGGAGAACAAAGAAGAAAAAGCTGATGGTATTGAAGTTGAAAAGCCACAAATACCAAAGGAAATAAAGGAGGAAAAAAATGAAAGCAAAGCAGA AACAGCTATTGATGATAACAAGCAATCACAGGCAAAAAAAGTAGGAGTAAACCAGGCAGATATAGCAAAGAAACCAAAACAGGCCCCAAAGCAAATTCCC AAGATGAAAATCACAGTTCCTCAACCATTTTCCTTGGCCACTGACAAAAGAATGTCTAGAGAAAGACGAGCTTCGGTGGATTTTAAAGACCTGCAACTTC CTAAACTATCCAAATCTGCTAGTGTCAACTACAAGGTGCAGTCCTCGCCTAGTGCTAAAGATCTAGTGGCCTCTAAGCTGAAGCGTAGTGCTACTACTGC ATCAAATCCCAGGCCGAGAGTTACATCTACCAAAACTGATGATAAGAAAGTTGAGAACGGTGTAAAAACTAAAGAAAAAATTCAGGTGAAGGACATCCAA AACAAATCTTCACAATCCATTCCCAAGAAGAACCAAGCAGAGGAATCGGAGACTAATAAACTTCGGAAGAACTCAACATTCAAAACATTGCCATTGCCAA GCTTCATTCTTCGGAAAGAATCGACCTCAAACCCTGAGATAAAGAAGGTTCCTACAACTGGCCCAAGGTCTGCTCTGCCTGGCCGCCATGGACACAAGTC TATCAGCGATGCTGAGAAGAACAAAACCAAAAACATAGGCAAGAACACCGTTTCAAGAACAATAAGCAGCAGTGCGAAGGAGACTATAAGCACACTAATT AAAGGGACTCGGAAGGCTTTGAATCCTTCAAAAGAGACTGTTAAATCTGTTGTTTCAATTGCCTGA
AA sequence Show only first row Show all	>Potri.001G140400.1 pacid=42789071 polypeptide=Potri.001G140400.1.p locus=Potri.001G140400 ID=Potri.001G140400.1.v4.1 annot-version=v4.1 MLRAVMEEKVAAEQVHKQEQINEEESGVVQNYVREVENKEEKADGIEVEKPQIPKEIKEEKNESKAETAIDDNKQSQAKKVGVNQADIAKKPKQAPKQIP KMKITVPQPFSLATDKRMSRERRASVDFKDLQLPKLSKSASVNYKVQSSPSAKDLVASKLKRSATTASNPRPRVTSTKTDDKKVENGVKTKEKIQVKDIQ NKSSQSIPKKNQAEESETNKLRKNSTFKTLPLPSFILRKESTSNPEIKKVPTTGPRSALPGRHGHKSISDAEKNKTKNIGKNTVSRTISSSAKETISTLI KGTRKALNPSKETVKSVVSIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35880			TPX2 (targeting protein for Xk...		Potri.001G140400 [exp]	0	1
AT4G22165			F-box family protein with a do...		Potri.004G137700 [exp]	1.00	0.9516
AT2G41810			Protein of unknown function, D...		Potri.006G050300 [exp]	5.74	0.9071
AT1G57775			Protein of unknown function (D...		Potri.004G110951 [exp]	5.74	0.8074
					Potri.001G073166 [exp]	8.71	0.9271
AT3G11930			Adenine nucleotide alpha hydro...		Potri.016G064000 [exp]	9.89	0.8912
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	10.09	0.9252
AT2G43890			Pectin lyase-like superfamily ...		Potri.007G145300 [exp]	10.81	0.7980
AT1G21695			hydroxyproline-rich glycoprote...		Potri.005G181200 [exp]	12.32	0.9165
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Potri.011G076500 [exp]	12.40	0.9170
					Potri.018G145526 [exp]	13.78	0.9074

Compare expression of checked genes

Potri.001G140400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.