Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17920 183 / 2e-56 RING/U-box superfamily protein (.1) AT5G46650 160 / 2e-47 RING/U-box superfamily protein (.1) AT2G35420 127 / 3e-35 RING/U-box superfamily protein (.1) AT2G35000 116 / 4e-30 ATL9 Arabidopsis toxicos en levadura 9, RING/U-box superfamily protein (.1) AT3G05200 117 / 5e-30 ATL6 RING/U-box superfamily protein (.1) AT1G35330 108 / 2e-27 RING/U-box superfamily protein (.1) AT4G09130 108 / 3e-27 RING/U-box superfamily protein (.1) AT1G32361 107 / 4e-27 ATL1F RING/U-box superfamily protein (.1) AT5G27420 107 / 8e-27 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT2G34990 106 / 1e-26 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093500 [exp] 375 / 4e-132 AT4G17920 186 / 1e-57 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 116 / 5e-30 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1) Potri.013G025800 [exp] 113 / 1e-28 AT3G05200 261 / 9e-84 RING/U-box superfamily protein (.1) Potri.005G160900 [exp] 108 / 9e-27 AT1G22500 203 / 5e-61 Arabidopsis thaliana Arabidopsis toxicos en levadura 15, RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 88 / 2e-19 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.015G056800 [exp] 87 / 5e-19 AT5G05810 263 / 8e-85 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 86 / 6e-19 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.018G042501 [exp] 86 / 7e-19 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.005G099000 [exp] 82 / 1e-18 AT1G20823 146 / 2e-44 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000487 [exp] 196 / 6e-61 AT4G17920 196 / 4e-61 RING/U-box superfamily protein (.1) Lus10004572 [exp] 191 / 4e-59 AT4G17920 209 / 3e-66 RING/U-box superfamily protein (.1) Lus10035368 [exp] 184 / 4e-56 AT4G17920 194 / 2e-60 RING/U-box superfamily protein (.1) Lus10030972 [exp] 184 / 4e-56 AT4G17920 191 / 6e-59 RING/U-box superfamily protein (.1) Lus10000333 [exp] 119 / 9e-31 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1) Lus10004460 [exp] 118 / 1e-30 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10029794 [exp] 118 / 3e-30 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10041134 [exp] 115 / 1e-29 AT1G72200 182 / 3e-54 RING/U-box superfamily protein (.1) Lus10031515 [exp] 114 / 1e-29 AT3G05200 232 / 1e-73 RING/U-box superfamily protein (.1) Lus10015167 [exp] 114 / 1e-29 AT3G05200 226 / 2e-71 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G140900.1 pacid=42790026 polypeptide=Potri.001G140900.1.p locus=Potri.001G140900 ID=Potri.001G140900.1.v4.1 annot-version=v4.1 ATGTCGTCTAATTCTTCATCATACCCAACAACTCTATCAATTGGCTCACCGGCAATAGCCCTACTTGTAACCGTAATTCTTCTTGTGCTCTTCTTTATAG GTTTCTTCTCTATATGCTTTTATAGATTTTTTATGGAAGGCATCGTCCACGGTTGGCATCTCAGGCAGAGTTCACTTGGCCTTGTAAATCCGGCTAGTTC AAAAGAGAATCCCGGACTTGATTCTTCACAAATACAACTTTTTCCAACATTTACATATTCAAGCGTCAAAGATTTTCGACGCGAACAACACGGACTTGAA TGTGCAATTTGCTTGGCAGAGTTTTCCGATGAAGATCTAGTACGCCTTTTAACGGTTTGCTACCATGTTTTCCACCAAGAATGCATTGATCTTTGGCTTG AATCCCACAAAACATGTCCAGTTTGTCGTAGAGATCTTGACTTGCCTAAGGAAGCATTGGAAAAGGCTCGGATAGGAGATCACCGAGCGGACATTAATGT GCATGATACTAATGAAACAAATGTATTGCTAGAGCATGCCATTAGCATTCATGTTAGCGAAGATAGTGGCGAGGAAGGTAGAGAAGGACATGGTAGAGGA AGCTCGACTCAGGATGTGGACAGACAAAACGAAGGGCATGAAAAGATATTGGGAATGTCAAGGTCACACTCGACAGGGCACTCAATTCTAGCAACTAGAG AAGAAGAGGATAGATATACTTTGAGATTGATGGAACGTGTGAAGGTAAAAATTACAAGGGGGCATTGTGCAACAGGAAGTTGTATTACGTTTGGGGACTA CTCAGGCCCTATGAATGATGGCCATGGAGGCTTCTCAGGGTGGTCGCATGGAGGCATCAAAAGAGAATAA
AA sequence Show only first row Show all	>Potri.001G140900.1 pacid=42790026 polypeptide=Potri.001G140900.1.p locus=Potri.001G140900 ID=Potri.001G140900.1.v4.1 annot-version=v4.1 MSSNSSSYPTTLSIGSPAIALLVTVILLVLFFIGFFSICFYRFFMEGIVHGWHLRQSSLGLVNPASSKENPGLDSSQIQLFPTFTYSSVKDFRREQHGLE CAICLAEFSDEDLVRLLTVCYHVFHQECIDLWLESHKTCPVCRRDLDLPKEALEKARIGDHRADINVHDTNETNVLLEHAISIHVSEDSGEEGREGHGRG SSTQDVDRQNEGHEKILGMSRSHSTGHSILATREEEDRYTLRLMERVKVKITRGHCATGSCITFGDYSGPMNDGHGGFSGWSHGGIKRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17920			RING/U-box superfamily protein...		Potri.001G140900 [exp]	0	1
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	1.00	0.9584
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Potri.002G143600 [exp]	1.41	0.9468
AT1G02180			ferredoxin-related (.1)		Potri.006G220700 [exp]	5.19	0.9326
AT4G08810		SUB1	calcium ion binding (.1)		Potri.001G005500 [exp]	5.47	0.9197
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	8.24	0.9202
AT2G46300			Late embryogenesis abundant (L...		Potri.014G094400 [exp]	10.39	0.8989
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.002G157300 [exp]	10.58	0.8906
AT3G55420			unknown protein		Potri.010G203900 [exp]	12.48	0.8543
AT4G38500			Protein of unknown function (D...		Potri.009G138000 [exp]	12.68	0.8944
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Potri.005G226700 [exp]	13.03	0.9078

Compare expression of checked genes

Potri.001G140900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.