Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17600 207 / 6e-64 RING/U-box superfamily protein (.1) AT3G03550 199 / 9e-61 RING/U-box superfamily protein (.1) AT4G17905 197 / 2e-60 ATL4H RING/U-box superfamily protein (.1) AT1G72220 158 / 2e-44 RING/U-box superfamily protein (.1) AT5G10380 132 / 9e-36 ATRING1, RING1 RING/U-box superfamily protein (.1) AT4G33565 130 / 2e-34 RING/U-box superfamily protein (.1) AT1G04360 124 / 5e-32 RING/U-box superfamily protein (.1) AT5G43420 119 / 3e-30 RING/U-box superfamily protein (.1) AT1G23980 110 / 5e-27 RING/U-box superfamily protein (.1) AT2G18650 98 / 2e-22 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G093100 [exp] 614 / 0 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 283 / 3e-93 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 233 / 9e-75 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 189 / 2e-56 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 162 / 3e-46 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.007G111900 [exp] 149 / 2e-41 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 145 / 1e-39 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 142 / 2e-38 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.008G165900 [exp] 118 / 5e-30 AT1G04360 312 / 2e-104 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013618 [exp] 201 / 3e-62 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10037264 [exp] 163 / 1e-46 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10015901 [exp] 162 / 1e-46 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10035677 [exp] 160 / 8e-46 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10012745 [exp] 145 / 2e-40 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10032161 [exp] 105 / 2e-25 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10014526 [exp] 103 / 1e-24 AT5G40250 423 / 6e-148 RING/U-box superfamily protein (.1) Lus10029178 [exp] 102 / 4e-24 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10004460 [exp] 102 / 7e-24 AT3G05200 307 / 6e-102 RING/U-box superfamily protein (.1) Lus10021197 [exp] 99 / 4e-23 AT1G04360 268 / 2e-87 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.001G141200.1 pacid=42792315 polypeptide=Potri.001G141200.1.p locus=Potri.001G141200 ID=Potri.001G141200.1.v4.1 annot-version=v4.1 ATGGCATCACTCGGCACCCCAAAAACTTGGATTCCATACGTGAACAATAAAGACTGTTCTCAAGGATTTTGTAGCTTATACTGTCCACAATGGTGCTACA TCATTTTCCCTCCTCCACCTCCCCTTGAATTCCTTGATGACAATTCAAGTCCAAAAATCTCTCCCCTTGTCATTGCCATTATAGGCATACTGCTCAGTGC TTTCCTTTTAGTAATTTACTACACCATAATATCTAAATACTGTGGAAACAATGATCCAGCAAGGAGAAGGGATCAAAACCATGGCCAAAATGAGGAATTT GAGGGAGATCACAACCCCTCTCTCCATGAACCTTGGCATGCTGCAACAACTGGCTTAGATGAGGCTCTTATAAGGTCCATCACAGTATGCAAGTACAAAA AGGGAGATGGTTTGATTGACGGGACAGATTGCTCAGTTTGTCTCAGCGAGTTTCAAGAAGATGAGAGCATAAGGCTTTTGCCTAAGTGCAGCCATGCTTT CCATGTTCCTTGCATTGATACATGGCTCCGCTCTCACTCGAATTGCCCACTGTGTCGTGCCAACATTGTTTTCTTTAGTGCTTCCCCGCCTCAATTGCCT CCTCCAGTGGCTGAAACTCCTCGAGGCAATGAATCTTGGCAAAATAGCCAACGATCCAACGACAATGTGGCTGCTACACAAGGCACGGAAAGGGTTGCTA GAGATGAGCAAGTGATGCAGAATCCTGCTGGGGATCCAAAGACTCCGTGGCGCGTATTTAGTGATTTGGGAAACTTGGAAGAGAGAGATACCATAATTGA GATGCGAGATATTGATGGGTATCAACGCATTAGGAGATCAGTTTCAATGGATCATCCATGTCAAAGCCACGCTTCTGTCGCTGATATTTTACGCATGAAT CAGGATGGAGTTGTTCGAGTAGAAGACTGTTCAGGAGATGTTGGATCATCAAAACATTCAGCAGAAGACAGCAAATTCACGTCTAGCAACAGAAGAAGAG TCTTGCATTGTGTGCTTAATCCCGTTACCATGAAGAGATCATTTTCAAGCGGAAGATTCTTTCCCACCGGCCATGGAAGAGTACGTGACGCCACTAGTCC TGTTTAA
AA sequence Show only first row Show all	>Potri.001G141200.1 pacid=42792315 polypeptide=Potri.001G141200.1.p locus=Potri.001G141200 ID=Potri.001G141200.1.v4.1 annot-version=v4.1 MASLGTPKTWIPYVNNKDCSQGFCSLYCPQWCYIIFPPPPPLEFLDDNSSPKISPLVIAIIGILLSAFLLVIYYTIISKYCGNNDPARRRDQNHGQNEEF EGDHNPSLHEPWHAATTGLDEALIRSITVCKYKKGDGLIDGTDCSVCLSEFQEDESIRLLPKCSHAFHVPCIDTWLRSHSNCPLCRANIVFFSASPPQLP PPVAETPRGNESWQNSQRSNDNVAATQGTERVARDEQVMQNPAGDPKTPWRVFSDLGNLEERDTIIEMRDIDGYQRIRRSVSMDHPCQSHASVADILRMN QDGVVRVEDCSGDVGSSKHSAEDSKFTSSNRRRVLHCVLNPVTMKRSFSSGRFFPTGHGRVRDATSPV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17600			RING/U-box superfamily protein...		Potri.001G141200 [exp]	0	1
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	6.00	0.8442
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	11.18	0.8282
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	11.22	0.8417
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	12.60	0.8340
					Potri.016G028600 [exp]	13.07	0.7921
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	14.69	0.8322
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	16.97	0.8243	Pt-PHOT1.1
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Potri.002G229900 [exp]	18.70	0.8054	GLR3.3
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Potri.006G184900 [exp]	19.44	0.7967
AT4G10790			UBX domain-containing protein ...		Potri.015G080200 [exp]	27.71	0.7958

Compare expression of checked genes

Potri.001G141200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.