Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G09040 130 / 3e-36 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52380 118 / 5e-31 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT5G50250 117 / 5e-31 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 115 / 5e-30 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G60000 111 / 4e-29 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37220 108 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G01080 102 / 4e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G52150 89 / 1e-20 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G34110 86 / 2e-18 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G172100 [exp] 124 / 8e-34 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G090700 [exp] 123 / 3e-33 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.005G161000 [exp] 121 / 3e-32 AT4G09040 219 / 5e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 117 / 7e-31 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G090200 [exp] 117 / 1e-30 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G340800 [exp] 114 / 5e-30 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.015G086500 [exp] 113 / 3e-29 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G202000 [exp] 110 / 3e-28 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G068300 [exp] 110 / 4e-28 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035678 [exp] 251 / 2e-82 AT2G35410 231 / 2e-74 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10037265 [exp] 251 / 3e-82 AT2G35410 234 / 1e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029372 [exp] 130 / 2e-35 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10041138 [exp] 125 / 6e-34 AT4G09040 201 / 7e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10016174 [exp] 124 / 3e-33 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10002222 [exp] 122 / 6e-33 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023191 [exp] 121 / 2e-32 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 119 / 2e-31 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008721 [exp] 111 / 2e-28 AT4G09040 218 / 8e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10020945 [exp] 110 / 3e-28 AT4G09040 219 / 6e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.001G141300.1 pacid=42789861 polypeptide=Potri.001G141300.1.p locus=Potri.001G141300 ID=Potri.001G141300.1.v4.1 annot-version=v4.1 ATGGCGGCATCAATATTAGAAGCAGCAACACTCTCCTTCTTCTCAACCCATCATCCTTCTTACTCCAGATTCTTCCTATCTCCCAAATCACCACCACTCT CTTTAAACCTCCACATTTCCAATCCTACCCCTCTCATTTCCCACAATTTCCCTCAGCCTTCCCTCACCCAAAACCACCCAAGAAGTAAAAGCCTCTGCTT TCAACTATGCTCCACTGTACAAGAAGTAACGGTGGAGATCACACCAGAGGAAGAGGAAATACAGGAAGCAAACCTAAAAAGAAAGCTTTTTGTGGTTAAT TTGCCCTGGTCTTTCTCTGTTGTTGATATCAAGGACCTTTTTGGCCAATGTGGGACTGTATCAGATGTTGAGATTATAAAGCAAAAGAATGGGAGAAGTA GGGGATTTGCTTTTGTGACAATGACTACTGGGGAGGAAGCTCAGGCTGCTATTGATAAGTTCAATTCTCTTGAAGTGTCGGGGAGGATTATCAGGGTGGA ATTTGCAAAGCGACTCAGGAGACCTCCTTCTCCACGCCTTCCAGGCACTCCTGCAGATATCCCTGCAGGAGAGACACGCCATAAGCTTTATATTTCTAAT CTTGCATGGAAAGTGAGAGGTAGTCATTTGAGAGAATTTTTCTCCACTAATTGTAACCCAGTTTCAAGTAGGGTCGTGTTTGATGGCCCTGCAGGAAGAT CTTCTGGGTATGGGTTTGTGTCATTTGCCACAAGGGAGGAAGCAGTGGCTGCTATTTCTGCTTTCAGTGGAAAGGAACTAATGGGTCGGCCCATTCGTCT AAAGTTCAGTGAAGACAAGGCTGATGAATCTGGAACTGAAAAGAAAGAGGAAGAAACTTCCGAGGTACAGCTTGAAGAGAAATAG
AA sequence Show only first row Show all	>Potri.001G141300.1 pacid=42789861 polypeptide=Potri.001G141300.1.p locus=Potri.001G141300 ID=Potri.001G141300.1.v4.1 annot-version=v4.1 MAASILEAATLSFFSTHHPSYSRFFLSPKSPPLSLNLHISNPTPLISHNFPQPSLTQNHPRSKSLCFQLCSTVQEVTVEITPEEEEIQEANLKRKLFVVN LPWSFSVVDIKDLFGQCGTVSDVEIIKQKNGRSRGFAFVTMTTGEEAQAAIDKFNSLEVSGRIIRVEFAKRLRRPPSPRLPGTPADIPAGETRHKLYISN LAWKVRGSHLREFFSTNCNPVSSRVVFDGPAGRSSGYGFVSFATREEAVAAISAFSGKELMGRPIRLKFSEDKADESGTEKKEEETSEVQLEEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35410			RNA-binding (RRM/RBD/RNP motif...		Potri.001G141300 [exp]	0	1
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Potri.005G079700 [exp]	3.00	0.9728
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Potri.002G052400 [exp]	3.87	0.9609	Pt-RRF.1
AT3G26570		ORF02, PHT2;1	phosphate transporter 2;1 (.1....		Potri.008G186601 [exp]	6.00	0.9673
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Potri.002G185200 [exp]	6.92	0.9606	ROC4.1
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Potri.001G044300 [exp]	7.41	0.9563
AT5G07900			Mitochondrial transcription te...		Potri.001G035200 [exp]	10.95	0.9663
AT1G26220			Acyl-CoA N-acyltransferases (N...		Potri.008G113600 [exp]	11.09	0.9664
AT1G22630			unknown protein		Potri.013G108100 [exp]	16.43	0.9579
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.002G065000 [exp]	16.97	0.9552	Lil6_1,OHP2.2
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	20.83	0.9601

Compare expression of checked genes

Potri.001G141300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.