Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-UBP21.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46740 351 / 5e-109 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 340 / 1e-105 UBP20 ubiquitin-specific protease 20 (.1) AT5G57990 268 / 3e-77 UBP23 ubiquitin-specific protease 23 (.1) AT4G31670 198 / 7e-54 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 186 / 1e-50 UBP19 ubiquitin-specific protease 19 (.1.2) AT5G65450 189 / 2e-50 UBP17 ubiquitin-specific protease 17 (.1) AT1G17110 187 / 4e-49 UBP15 ubiquitin-specific protease 15 (.1.2) AT3G14400 172 / 5e-45 UBP25 ubiquitin-specific protease 25 (.1) AT4G24560 174 / 1e-44 UBP16 ubiquitin-specific protease 16 (.1) AT2G22310 118 / 2e-28 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092400 [exp] 1142 / 0 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.006G185200 [exp] 271 / 1e-77 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G107500 [exp] 268 / 7e-77 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.018G009500 [exp] 204 / 3e-55 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.006G270600 [exp] 200 / 1e-54 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.002G104800 [exp] 192 / 2e-50 AT4G24560 551 / 7e-179 ubiquitin-specific protease 16 (.1) Potri.011G095200 [exp] 186 / 7e-49 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 185 / 3e-48 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.005G156900 [exp] 185 / 4e-48 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043126 [exp] 476 / 4e-156 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1) Lus10043127 [exp] 464 / 2e-153 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10032623 [exp] 468 / 3e-147 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1) Lus10017529 [exp] 255 / 2e-77 AT5G46740 218 / 5e-65 ubiquitin-specific protease 21 (.1) Lus10035825 [exp] 252 / 4e-71 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 252 / 4e-71 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10026918 [exp] 199 / 4e-54 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 199 / 4e-54 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10009273 [exp] 199 / 8e-53 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10005591 [exp] 179 / 3e-47 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G142000.1 pacid=42790665 polypeptide=Potri.001G142000.1.p locus=Potri.001G142000 ID=Potri.001G142000.1.v4.1 annot-version=v4.1 ATGGAGGTTTCAACTGAAGCAGCCGTTGATGTGTTTTCATTGCCTTCTAAAATTGAATCCCTAGAGTCCAAATCTCTTATTGTTGCTGATGGGTTTTCTT CAAAGTCTCAGGTTGAAGCTCTAAATGACGAACTTATGGAAGACTCACACGAGGATCCAGTGAATTCACCTAATTCTCTCAAAACCTTACCCGAGTTAAG CTGTGGAGAGCAGTGTTTGGTTTCTATATCGTCAAATTCAGGCGGGTTTTCACAAATTTCGACTTCAACGCCTCAATCTGAAGAAACCCTAACCATTTCC TTGCCTTCTTCTCATATCGTATCCCCAGGTAACCAGATTTCGGTTCCTTCACAGTCAAATCAAGATGGGTCTGGGTCCTTTTTAGCTAATGGTAATGAAG ATGGGGTTTTATTGGATTCTGGCCACCGTTTGGTCGCTAGTTGTGATAATGATGATAGTGAGCCTGATTCACCTATGCAATTAGCACGTGAAAAGCTTGC TTCGAGCTCGTCTGATTCGAAGCTTGCTGATGGAAATGTTGAGGATGAGGAAGAGGGTTTTGGTAATGATGACGAGAAAGAGAATCCCAGGCGATTTTTT CATTATGACCCTTATTATCACGCAATGTATCATAATCAATGGGGGCATTTTGATCCCGAGTTCCATGAGTATCATCCGGGTTTACCTCCTCCTTGGATTA GGAGGTTTCGCAGACAACCATGTCCTCAATTATGGAATCGTTGGGATGACAGAGAGAAGAGAAGAAATCAAGAATACAGGCTTCCTGGTTTTATGCAGGA AACTGGACCTACTGGTGTGGGTGCTGCGCTTTTTAATAAAGGAAACACTTGTTATATTAATGCAATCCTGCAATGCTTTACGCATACTGTGCCTCTTGTT CAGGCTCTTCGTTCTTGCAATCATGAAATGCCCTGCATTACTGAAGGGTTCTGTGTTCTTTGTGTTCTTCGTGATCACATTGAACTTTCTTTATCTTCGT CTGGAAAGATTCTTGAGCCTTTGAAACTTGTCAACAATTTGGAAAATATTTCATCTGTTTTTCGTCGATACCAGCAGGAAGATGCCCATGAATTCCTCCA ATGTTTGTTAGAAAGACTTGAAAGGCATTGTTTGGATTCAAGCCTAACTGATGACAGCGCATCCTCCCATGATAAGAACATAGTTGAGCGGGTATTTGGA GGTCGTCTTGTTAGCAAATTACGATGCTGCAATTGTGGTCACTGTTCTGATAAATATGAGCCACTGATTGACCTGAGTTTGGAGATCGAAGATGCGGACT CTCTTCAGAGTGCACTGGAGTCATTCACCAAGGTGGAGAAAATTGAGGATTCAGAGACAAAGTTTACATGTGAAAGCTGCAAGGAGGAAGTTTCTAGGGA AAAACAGCTTATGCTGGACCAGGCTCCTTCAGTTGCTGCTCTTCATTTGAAGATATTCAAGATTGATGGGACCTCTGTTGAGAAGATTGGCAAGCATGTG CAGTTTCCACTGGAGTTGGACTTGAAGCCCTACACCAATGACAATGAGGACAGTGATGAGGTGGGTTTCAAGTATCAACTATATGCGGTTGTGGTGCACA AAGGAGATTCACTTATGTCCGGACATTACTTTTGCTATATAAGATCCTCTCCAGACACATGGCACAAGTTGGATGACCCAGAGGTCAGCAAGGAACAGGA AGAATTTGTGCTCTCTCAAGCTGCCTACATTCTGTTCTATGCTAGGGAGGGTACACCCTGGTGTTCAAGTTTGATCAAACCACAAGAGCTTTGCTCAGAT CCCAGCAATTCAAATACATCACCCAAGTCAGTTCTAGATAATGTTAACCGTGAATGCACTGGTGTAGGGAATAACAAAAGTTCTGAGACCAATGTAATTA AGGATGCCATTGAGGCAACTTCAACTCACATCCCTTTTGAGAGAAAGTTTGAAGAGAGTGAATCTAGAGTTGAGACTAAGGGAAATTTTGTTCAGATTTC CCCTGCCAATAGACCAAACTTTCATCGCATTGTGTCTATAGGTGAGACCCCCATGGTTGATGTTTCTGTGCCACTTGGAGTAAGTGATTACCACGATGGA GTTTTGCATGATGAGATGTTATGTTTTCCACCTTCTGTTGAAGAAGATAACTGCAATCAGGGTGCTGAGAAAATTGAAATAAATGGTGATCTGCATTCCC CAACTCCACACAGATCACCCACTCCAGATAAAGGACTGCCAGAAGCCAGACATCGTATTCTGCGAGATCATCAGAAAGGGGAGAACCGGGTGAATTGTAA AAGATCATCAAAAAAGGTCACAAAGGATTCACAGACAGCAGAAGCTCTTAGATGCATCAAGAGAATGCCAACTGCAAGGGGCATGAAACTTATGGCTGCC ATGCTTCCTAGGAATGACAAGATAAGACCAAGATCATCTCCATGTAAAAGGGCCAGCCCTCCTGGTTCTCGCTGCAAACCCACCATACGCATGGCAGTTA TGCGTTGA
AA sequence Show only first row Show all	>Potri.001G142000.1 pacid=42790665 polypeptide=Potri.001G142000.1.p locus=Potri.001G142000 ID=Potri.001G142000.1.v4.1 annot-version=v4.1 MEVSTEAAVDVFSLPSKIESLESKSLIVADGFSSKSQVEALNDELMEDSHEDPVNSPNSLKTLPELSCGEQCLVSISSNSGGFSQISTSTPQSEETLTIS LPSSHIVSPGNQISVPSQSNQDGSGSFLANGNEDGVLLDSGHRLVASCDNDDSEPDSPMQLAREKLASSSSDSKLADGNVEDEEEGFGNDDEKENPRRFF HYDPYYHAMYHNQWGHFDPEFHEYHPGLPPPWIRRFRRQPCPQLWNRWDDREKRRNQEYRLPGFMQETGPTGVGAALFNKGNTCYINAILQCFTHTVPLV QALRSCNHEMPCITEGFCVLCVLRDHIELSLSSSGKILEPLKLVNNLENISSVFRRYQQEDAHEFLQCLLERLERHCLDSSLTDDSASSHDKNIVERVFG GRLVSKLRCCNCGHCSDKYEPLIDLSLEIEDADSLQSALESFTKVEKIEDSETKFTCESCKEEVSREKQLMLDQAPSVAALHLKIFKIDGTSVEKIGKHV QFPLELDLKPYTNDNEDSDEVGFKYQLYAVVVHKGDSLMSGHYFCYIRSSPDTWHKLDDPEVSKEQEEFVLSQAAYILFYAREGTPWCSSLIKPQELCSD PSNSNTSPKSVLDNVNRECTGVGNNKSSETNVIKDAIEATSTHIPFERKFEESESRVETKGNFVQISPANRPNFHRIVSIGETPMVDVSVPLGVSDYHDG VLHDEMLCFPPSVEEDNCNQGAEKIEINGDLHSPTPHRSPTPDKGLPEARHRILRDHQKGENRVNCKRSSKKVTKDSQTAEALRCIKRMPTARGMKLMAA MLPRNDKIRPRSSPCKRASPPGSRCKPTIRMAVMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46740		UBP21	ubiquitin-specific protease 21...		Potri.001G142000 [exp]	0	1	Pt-UBP21.2
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	2.00	0.9661
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.001G074000 [exp]	3.16	0.9571
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Potri.004G131600 [exp]	3.46	0.9566
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	4.47	0.9479
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.014G021100 [exp]	4.47	0.9469	CYCA3.2
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	5.47	0.9337
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	5.47	0.9387
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.001G125000 [exp]	5.65	0.9378
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Potri.006G188700 [exp]	6.00	0.9369
AT3G54750			unknown protein		Potri.006G199200 [exp]	6.78	0.9054

Compare expression of checked genes

Potri.001G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.