Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBP20.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17890 536 / 0 UBP20, AGD8 ARF-GAP domain 8 (.1.2) AT5G46750 530 / 0 AGD9, AGD8 ARF-GAP domain 9 (.1) AT2G35210 478 / 9e-169 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT2G37550 130 / 2e-33 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT3G53710 129 / 3e-33 AGD6 ARF-GAP domain 6 (.1.2) AT3G17660 94 / 8e-22 AGD15 ARF-GAP domain 15 (.1) AT5G54310 96 / 2e-21 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT4G21160 90 / 1e-19 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT4G05330 87 / 6e-19 AGD13 ARF-GAP domain 13 (.1) AT3G07940 84 / 2e-17 Calcium-dependent ARF-type GTPase activating protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G092300 [exp] 743 / 0 AT4G17890 525 / 0.0 ARF-GAP domain 8 (.1.2) Potri.016G095100 [exp] 130 / 2e-33 AT3G53710 462 / 9e-161 ARF-GAP domain 6 (.1.2) Potri.006G084000 [exp] 130 / 2e-33 AT3G53710 498 / 8e-175 ARF-GAP domain 6 (.1.2) Potri.012G036900 [exp] 96 / 1e-22 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.011G127000 [exp] 99 / 2e-22 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 99 / 4e-22 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 96 / 2e-21 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 94 / 1e-20 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G026400 [exp] 88 / 1e-19 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004562 [exp] 561 / 0 AT4G17890 512 / 0.0 ARF-GAP domain 8 (.1.2) Lus10000903 [exp] 508 / 1e-180 AT4G17890 469 / 3e-165 ARF-GAP domain 8 (.1.2) Lus10004561 [exp] 495 / 5e-176 AT4G17890 451 / 2e-158 ARF-GAP domain 8 (.1.2) Lus10004125 [exp] 304 / 8e-102 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2) Lus10000902 [exp] 242 / 2e-77 AT2G35210 201 / 9e-62 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) Lus10003978 [exp] 125 / 1e-31 AT2G37550 516 / 0.0 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023766 [exp] 125 / 1e-31 AT2G37550 485 / 4e-170 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10023765 [exp] 119 / 2e-29 AT2G37550 507 / 4e-178 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) Lus10027249 [exp] 102 / 7e-25 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 96 / 2e-21 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.001G142100.1 pacid=42792790 polypeptide=Potri.001G142100.1.p locus=Potri.001G142100 ID=Potri.001G142100.1.v4.1 annot-version=v4.1 ATGGCGTCGGAAAATTTCACTGACAAAAACGTGGTGTTCAGAAAACTGAAAGCGAAATCGGATAACAAGATGTGTTTTGATTGTAATGCGAAAAATCCTA CTTGGGCTTCAGTAACGTACGGGATCTTCCTTTGCATCGACTGCTCTGCTGTTCACCGTAGTCTCGGTGTACACATCAGCTTCGTTAGGTCTACGAATTT AGATTCATGGAGTCCAGAGCAATTGAGAACAATGAGCTTTGGGGGAAATAATCGCGCTCACGCTTTCTTTAAGCAGCATGGTTGGACTGATGGGGGGGAA ATTGAGGCCAAGTATACATCTAGAGCTGCAGAGTTATATAGGCAAATACTTTCAAAAGAAGTTGCTAAAAGTATGGCAGAAGAAGCTGGCTTGCCATCAT CCCCTGTTACTTCAAAGTCAGCCCAAGCAGGAAATGGACTTCCTGATGTCAAGATTAATGATGCTCCTAAAGAAAGCTCATTAGGAAAACAAGAAACACC TGATTTAGTTTGTTCCCCAAAAGCTTCTCGCTCGGTTATTACCAGTTCTGTGAAGAAGCCACTTGGTGCAAAGAGAACTGGGAAAACAGGGGGGCTTGGT GCTAGAAAGCTTGCTACGAAGCCTAGTGAAAATCTCTATGACCAGAAGCCTGAAGAACCAGCACTTCCTGTAACTTCCACAACTAACAACAACAACAACA ACAACAACAACAACACAAAAGCTGGCACATCTTTTGCATCTCGCTTTGAGTATGTAGATAATGTTCAACCTGCTGAGATGATATCTGGTGGCCCACAAGT GATTAATCATGTATCTCCGCCAAAGTCATCAAGCTTTTTTGCAGAATTCGGGATGGAAAGCGGTTTTCCTAAGAAAGGAAGTTCAAACTACTCAAAAGTT CAAATTCAGGAAACAGATGAAGCAAGAAAGAAGTTCTCAAATGCAAAATCAATCTCATCAGCCCAATTTTTTGGTGATCAGAACAAAGCTGATGCTGATG CTCAAGTTTCATTGCAGAAATTCTCTGGCTCCTCAGCTATATCAAGTGCTGATCTTTTTGGTCAAAGCGATGATCAGTCAATTGATCTTGCTGCGAGTGA CCTCATCAATCGGATCTCTTTCCAGGCACAACAAGATATCTCTTCCCTAAAGAATATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCCTTCGCATCAACC TTCATAACTGATCTTCAGGACAGAATCCTCTGA
AA sequence Show only first row Show all	>Potri.001G142100.1 pacid=42792790 polypeptide=Potri.001G142100.1.p locus=Potri.001G142100 ID=Potri.001G142100.1.v4.1 annot-version=v4.1 MASENFTDKNVVFRKLKAKSDNKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLRTMSFGGNNRAHAFFKQHGWTDGGE IEAKYTSRAAELYRQILSKEVAKSMAEEAGLPSSPVTSKSAQAGNGLPDVKINDAPKESSLGKQETPDLVCSPKASRSVITSSVKKPLGAKRTGKTGGLG ARKLATKPSENLYDQKPEEPALPVTSTTNNNNNNNNNNTKAGTSFASRFEYVDNVQPAEMISGGPQVINHVSPPKSSSFFAEFGMESGFPKKGSSNYSKV QIQETDEARKKFSNAKSISSAQFFGDQNKADADAQVSLQKFSGSSAISSADLFGQSDDQSIDLAASDLINRISFQAQQDISSLKNIAGETGKKLSSFAST FITDLQDRIL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	0	1	UBP20.2
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.017G035800 [exp]	1.73	0.9569
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Potri.010G105900 [exp]	2.00	0.9639	Pt-ADL5.1
AT1G12000			Phosphofructokinase family pro...		Potri.006G281900 [exp]	4.00	0.9560
AT3G06035			Glycoprotein membrane precurso...		Potri.010G033400 [exp]	5.09	0.9574
AT5G10840			Endomembrane protein 70 protei...		Potri.018G018400 [exp]	5.74	0.9477
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.008G105300 [exp]	6.48	0.9460	ACLB.2
AT3G12955			SAUR-like auxin-responsive pro...		Potri.001G458000 [exp]	7.48	0.9537	SAUR4
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.002G222400 [exp]	8.48	0.9522
AT2G35120			Single hybrid motif superfamil...		Potri.015G122500 [exp]	8.94	0.9454
AT4G35830		ACO1	aconitase 1 (.1.2)		Potri.005G108100 [exp]	9.84	0.9158	Pt-ACO.1

Compare expression of checked genes

Potri.001G142100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.