Plant FIBer expression Database

Potri.001G142150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G142150.1 pacid=42793530 polypeptide=Potri.001G142150.1.p locus=Potri.001G142150 ID=Potri.001G142150.1.v4.1 annot-version=v4.1
ATGGTAGGCCCTACAAATTTATTTATTGACCCGCGGACGGCAGCTGCACGTGATTCACGACTTCCCTCTTTCTCCTTGAATTTTTTACTCAAGCGTGTCG
TCAGCTTTTGCCACGCGCCTACTTGTCGTGACGCTTGTAGTCTTTACAGCCGCCTTTGTCACCTTCTGGAGAAAGAGAAGCCTCTCATTCTGTTTACTGC
AACCCTCTGTACTGGCGGCGACGGCAAGTCTTTCGAGTTCTTTCGTCGCCTTCTGGAAAAAGAGAAGCCTGGATCGCTGATGGATCGATCTGCCTCCCTA
ATTGCATGTTCCCGTTCAGAATGA
AA sequence
>Potri.001G142150.1 pacid=42793530 polypeptide=Potri.001G142150.1.p locus=Potri.001G142150 ID=Potri.001G142150.1.v4.1 annot-version=v4.1
MVGPTNLFIDPRTAAARDSRLPSFSLNFLLKRVVSFCHAPTCRDACSLYSRLCHLLEKEKPLILFTATLCTGGDGKSFEFFRRLLEKEKPGSLMDRSASL
IACSRSE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G142150
[exp]
0 1
AT4G39250 MYB RSM2, ATRL1 RADIALIS-LIKE SANT/MYB 2, RAD-... Potri.007G025200
[exp]
1.00 0.8531
AT4G28400 Protein phosphatase 2C family ... Potri.017G013300
[exp]
4.58 0.8104
AT3G25730 AP2_ERF EDF3 ethylene response DNA binding ... Potri.004G220700
[exp]
5.09 0.8263
AT2G33060 AtRLP27 receptor like protein 27 (.1) Potri.012G026600
[exp]
7.41 0.7524
AT5G01750 Protein of unknown function (D... Potri.016G131701
[exp]
17.66 0.7461
AT3G25730 AP2_ERF EDF3 ethylene response DNA binding ... Potri.004G220400
[exp]
19.39 0.7895
AT2G46140 Late embryogenesis abundant pr... Potri.014G090800
[exp]
20.61 0.7288 PM22.1
AT4G29905 unknown protein Potri.008G007932
[exp]
23.68 0.6864
AT2G15220 Plant basic secretory protein ... Potri.001G299600
[exp]
26.05 0.6627
AT4G30780 unknown protein Potri.006G180500
[exp]
26.15 0.7506

Potri.001G142150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.