Plant FIBer expression Database

Potri.001G142250 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35215 73 / 5e-18 unknown protein
AT5G46770 71 / 7e-17 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G092100
[exp]
172 / 4e-57 AT2G35215 74 / 3e-18 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000485
[exp]
56 / 2e-11 AT2G35215 50 / 2e-09 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G142250.2 pacid=42787701 polypeptide=Potri.001G142250.2.p locus=Potri.001G142250 ID=Potri.001G142250.2.v4.1 annot-version=v4.1
ATGAGCCTCAATTGTCTTAGCTGCCGGGATTTGCAACGGAGTGATTCTGAGAGGGAGTGTTTGCAAGGTAAACCGCATCAAAATAAACTGGGTTGCATTA
TGATGGAAAGAAGCTGGTCAGGAAACTTGAGCCCACCATCTCATGGGCAAATGGGGAAAAAATCTACAGCGGTTGCTGCAAGGAAGGTGATCAAGAAAGA
GCCTCACCGCTTAAATAGTGCAGGGGGCGTTACGTTCAAGGGATGTGAAGAGCCAAGGTTGGTGAGGAGCTCTGGAATGAGAAGGGATTGGAGCTTTGAG
GATTTAAGGAAACCATGTACAATAAATTATTAA
AA sequence
>Potri.001G142250.2 pacid=42787701 polypeptide=Potri.001G142250.2.p locus=Potri.001G142250 ID=Potri.001G142250.2.v4.1 annot-version=v4.1
MSLNCLSCRDLQRSDSERECLQGKPHQNKLGCIMMERSWSGNLSPPSHGQMGKKSTAVAARKVIKKEPHRLNSAGGVTFKGCEEPRLVRSSGMRRDWSFE
DLRKPCTINY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G35215 unknown protein Potri.001G142250
[exp]
0 1
AT5G57970 DNA glycosylase superfamily pr... Potri.001G044402
[exp]
2.23 0.9003
AT3G61180 RING/U-box superfamily protein... Potri.014G075000
[exp]
2.82 0.8079
Potri.005G121975
[exp]
3.60 0.7766
AT5G22900 ATCHX3 cation/H+ exchanger 3, ARABIDO... Potri.006G176800
[exp]
5.19 0.8430
AT4G37530 Peroxidase superfamily protein... Potri.001G329200
[exp]
6.00 0.8429
AT2G19590 ATACO1, ACO1 ACC oxidase 1 (.1) Potri.006G151600
[exp]
6.32 0.7987 ACO5
AT1G03940 HXXXD-type acyl-transferase fa... Potri.019G118000
[exp]
6.92 0.8394
Potri.006G037801
[exp]
7.07 0.8398
AT5G24580 Heavy metal transport/detoxifi... Potri.012G007300
[exp]
9.00 0.8033
AT1G21460 SWEET1, AtSWEET... Nodulin MtN3 family protein (.... Potri.002G072800
[exp]
10.24 0.7571

Potri.001G142250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.