Plant FIBer expression Database

Potri.001G142300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G142300.6 pacid=42790656 polypeptide=Potri.001G142300.6.p locus=Potri.001G142300 ID=Potri.001G142300.6.v4.1 annot-version=v4.1
ATGAACCAGAAAGCTAAATCACTGTTGTTATACAAAATGGAGAATGGGAAAATCATTAATCCTTCTATAATACAAGATGGTTTCATGACAAAGACTCATG
ATGAAGAAGAGCTCTCCAAAAGCCATAATGACACTACTAAACGACTGAAGAACCGTGAACGGCAACGTAGATACAGGGCCCGAAAACGCCGTGAAGCAGA
TACAAAGAAGGCCTCTGTGACAAACCAACCAACACCACCACGAGGAGAAGTGGAACTGAATGGGCATCATAATAATAACATAACCCCTAATCCTTGTAAA
AGAAATTGGAAAAAAGATGCACGAAGAGCTCATGCATGTAAGAATCTGGAAGAAACACATAACGCTGCTGTTATTACTGCATTGCCCTTTAATATTAAAA
GCCAGACTGTCTGCTCAGCCCCTGGAATAATGACAGGGCCATCACAAGAGAGGGAAACTCATTCTAAGAATTCTGTTAGCTTGTGGATTAGTGAAACAGA
TAAGACCAAGTTTGGTCGAAGAGATTGGAAGGCAGAGGCAAGAAGTAATAAAAAGTAG
AA sequence
>Potri.001G142300.6 pacid=42790656 polypeptide=Potri.001G142300.6.p locus=Potri.001G142300 ID=Potri.001G142300.6.v4.1 annot-version=v4.1
MNQKAKSLLLYKMENGKIINPSIIQDGFMTKTHDEEELSKSHNDTTKRLKNRERQRRYRARKRREADTKKASVTNQPTPPRGEVELNGHHNNNITPNPCK
RNWKKDARRAHACKNLEETHNAAVITALPFNIKSQTVCSAPGIMTGPSQERETHSKNSVSLWISETDKTKFGRRDWKAEARSNKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.001G142300
[exp]
0 1
AT1G52240 PIRF1, ATROPGEF... phytochrome interacting RopGEF... Potri.006G091800
[exp]
3.00 0.8008
AT1G26665 Mediator complex, subunit Med1... Potri.003G146900
[exp]
3.31 0.8294
AT5G50930 Histone superfamily protein (.... Potri.015G105900
[exp]
4.58 0.7412
AT5G17610 unknown protein Potri.013G073100
[exp]
5.09 0.8171
Potri.004G236100
[exp]
11.31 0.7462
AT5G02270 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRI... Potri.006G086000
[exp]
11.48 0.7525
Potri.017G061800
[exp]
11.95 0.7520
AT1G56090 Tetratricopeptide repeat (TPR)... Potri.005G097300
[exp]
14.14 0.7424
AT4G00355 ATI2 ATG8-interacting protein 2, un... Potri.002G160700
[exp]
14.45 0.7529
AT3G62140 unknown protein Potri.014G112900
[exp]
18.33 0.7267

Potri.001G142300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.