Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35230 96 / 5e-22 IKU1 HAIKU1, VQ motif-containing protein (.1.2) AT1G32610 70 / 2e-13 hydroxyproline-rich glycoprotein family protein (.1.2) AT5G46780 57 / 4e-09 VQ motif-containing protein (.1.2) AT1G78310 42 / 0.0003 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091800 [exp] 238 / 5e-77 AT1G32610 71 / 1e-13 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.005G162300 [exp] 48 / 4e-06 AT1G78310 142 / 3e-40 VQ motif-containing protein (.1) Potri.002G099900 [exp] 43 / 0.0002 AT1G78310 141 / 2e-39 VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036479 [exp] 49 / 1e-06 AT1G78310 153 / 6e-45 VQ motif-containing protein (.1) Lus10010346 [exp] 45 / 4e-05 AT1G78310 158 / 8e-47 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.001G142400.1 pacid=42791489 polypeptide=Potri.001G142400.1.p locus=Potri.001G142400 ID=Potri.001G142400.1.v4.1 annot-version=v4.1 ATGGATAACTCGAAAAACAGGCAGAGTGATCATTTGGGTGTGAACAAGATAGGCAAGAACATAAAGAAGAGTCCTTTGCACCAACCCAATTTTGCTAACA ATCCCAATCGGCAACAGCCTCAACCTCAGGTCTACAACATAAGCAAGAATGACTTTAGGAACATTGTTCAGCAACTAACCGGTTCCCCATCACAAGAACC CTTGCCTAGACCTCCCAATAATCCACCTAAGCCTCAAAGTATGCGGTTGCAAAAGATTAGACCGCCACCTTTAACACCTATTAATCGACCTCATGTTCCT CCTCCATTCCCAGCTCCAGCAGTGGCTCCACCTCCGGTTCCTTATCATAATGCCTTTGTAAGGCCAGGGATGCTGCCCCCGCCCAGCCAATTTGGGCTAC CTTCTCCAACAATGATGCCACCATTGACACCTGGAGACTCAGGTTGGGCAAACACAGCAGAGTCTCCTATCTCGGCATACATGCGTTACCTTCAGAATTC AATTATAGACCCGGGTTCTTGGGGAAACCAAACTCAACCTCCACGACAACCCTATCCACCACTGCCACAAGGTCCAGGGCAAATTCAGCCTCAACATCAA CCACCTTCTGGTGGTTTGCTTCCGAATCCACATCTGCCTCCAGTACCCACACCTGGAGCAAATGGTCCTGTCCCATATATGCCCAATCTCCCTTCCCCGC GAATGAATGGTCCTCCTCTTTTACCCTCGCCAACATCTCAATTTCTTTTGCCCTCTCCCACTGGTTACATGAGTTTATTGTCTCCCAGGTCACCTTACCC TCTACTTCCTCCTGGGATTCAGTTTCGTCCACTGACACCAAATTTTGCATTTTCACCAATGGCTCAGTCAGGGGTTTTAGGTCCAGGGCCTCAACCTCCA CCTTCTCCAGGTTTTTTTCCGTTATCACCTTCAGGTTTTTTCCCCTTCTCAAGTCCAAGATGGAGAGATCAATAG
AA sequence Show only first row Show all	>Potri.001G142400.1 pacid=42791489 polypeptide=Potri.001G142400.1.p locus=Potri.001G142400 ID=Potri.001G142400.1.v4.1 annot-version=v4.1 MDNSKNRQSDHLGVNKIGKNIKKSPLHQPNFANNPNRQQPQPQVYNISKNDFRNIVQQLTGSPSQEPLPRPPNNPPKPQSMRLQKIRPPPLTPINRPHVP PPFPAPAVAPPPVPYHNAFVRPGMLPPPSQFGLPSPTMMPPLTPGDSGWANTAESPISAYMRYLQNSIIDPGSWGNQTQPPRQPYPPLPQGPGQIQPQHQ PPSGGLLPNPHLPPVPTPGANGPVPYMPNLPSPRMNGPPLLPSPTSQFLLPSPTGYMSLLSPRSPYPLLPPGIQFRPLTPNFAFSPMAQSGVLGPGPQPP PSPGFFPLSPSGFFPFSSPRWRDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	0	1
AT4G24200			Transcription elongation facto...		Potri.005G241400 [exp]	3.00	0.9015
AT4G02720			unknown protein		Potri.002G051500 [exp]	3.31	0.9139
AT1G15130			Endosomal targeting BRO1-like ...		Potri.008G126900 [exp]	7.21	0.8806
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Potri.018G076200 [exp]	8.36	0.8519
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Potri.008G144200 [exp]	8.48	0.8810
AT5G15730		CRLK2, AtCRLK2	calcium/calmodulin-regulated r...		Potri.004G113400 [exp]	8.66	0.8788
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G324800 [exp]	8.71	0.8668
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.004G028800 [exp]	8.83	0.8590
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Potri.006G125200 [exp]	10.48	0.8412
AT2G36480			ENTH/VHS family protein (.1.2....		Potri.006G115600 [exp]	11.53	0.8873

Compare expression of checked genes

Potri.001G142400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.