Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17800 300 / 5e-102 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G35270 285 / 4e-96 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT2G42940 202 / 3e-64 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 202 / 4e-63 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 200 / 5e-62 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 198 / 1e-61 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G14465 192 / 8e-60 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G04570 187 / 3e-57 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT3G60870 174 / 6e-53 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT1G76500 172 / 8e-52 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091300 [exp] 417 / 9e-148 AT4G17800 315 / 4e-108 Predicted AT-hook DNA-binding family protein (.1) Potri.008G058700 [exp] 224 / 2e-71 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.001G115200 [exp] 219 / 5e-70 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1) Potri.003G116900 [exp] 218 / 9e-70 AT4G22810 258 / 5e-85 Predicted AT-hook DNA-binding family protein (.1) Potri.005G202700 [exp] 214 / 1e-68 AT2G42940 305 / 3e-105 Predicted AT-hook DNA-binding family protein (.1) Potri.010G200100 [exp] 214 / 2e-67 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.002G059400 [exp] 211 / 3e-67 AT2G42940 311 / 2e-107 Predicted AT-hook DNA-binding family protein (.1) Potri.010G074201 [exp] 211 / 4e-67 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.013G044500 [exp] 211 / 5e-67 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020763 [exp] 218 / 4e-70 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10000519 [exp] 204 / 6e-64 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10031460 [exp] 196 / 9e-63 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10030966 [exp] 197 / 2e-62 AT2G35270 199 / 1e-63 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 199 / 4e-62 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10006577 [exp] 196 / 4e-61 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10031458 [exp] 187 / 4e-59 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10015862 [exp] 178 / 3e-54 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1) Lus10009301 [exp] 177 / 1e-53 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10042551 [exp] 165 / 3e-49 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.001G142800.1 pacid=42790014 polypeptide=Potri.001G142800.1.p locus=Potri.001G142800 ID=Potri.001G142800.1.v4.1 annot-version=v4.1 ATGGCCGGTTTAGATTTAGGCACTACTTCTCGTTACGTACACCAGCTCCACCACAGACCTGACCTTCACCTCCAGCACCAGCCTGATCCTGAAGACCACG ATTCCAATAGGGCTGGAGGCGGTCTTGGAGGCGGCAGTGGTGGTCACTTTTCTACTGATCACCACCACGACGATGGTTCGCACCAAGGTCTTGACCTTGT TGCTGCCGCGGCTAACTCCGGGCAAGGAGACTTAGTTGGCCGTAGGCCTCGAGGCCGTCCAGCTGGTTCTAAAAACAAACCGAAGCCTCCTGTTATCATT ACTCGCGAGAGTGCCAACACACTGCGTGCCCACATTCTTGAAGTAGGAAATGGGTGCGATGTATTCGAGTGCGTGGCTAACTACGCGCGTAGACGGCAGC GCGGGATTTGCATACTGAGCGGAGCAGGGACAGTAACAAATGTTAGCATCAGGCAACCAGCTGCAGCAGGAGCTATTGTGACTCTCCATGGCAGATTTGA GATCTTATCTCTGTCTGGATCTTTCTTGCCACCTCCAGCTCCACCTGGCGCAACGAGCCTCACAATCTTCCTTGCTGGGGGACAAGGCCAGGTGGTGGGA GGAAGCGTGGTAGGAGAGCTTACCGCAGCAGGGCCGGTTATAGTGATTGCAGCATCCTTCACAAACGTGGCATATGAGAGGCTGCCTTTGGATGAGGATG ACCAATTGCAGATGCAGAGTGGGGGTGGGGGTGGGGGTGGAGGTGGTGCCGGTGGTGGTGGTGTTGGGAATAGTCCTTTTAATGAATCGGGAACGCCTTC TGGGGGGCTGCCGTTCTTTAATTTGCCGCTTAATATGACCGCTAACGTGCAGTTGCCAGTGGATGGATGGGGAGGGAACTCAGGCGGTAGGGTTCCCTTT TGA
AA sequence Show only first row Show all	>Potri.001G142800.1 pacid=42790014 polypeptide=Potri.001G142800.1.p locus=Potri.001G142800 ID=Potri.001G142800.1.v4.1 annot-version=v4.1 MAGLDLGTTSRYVHQLHHRPDLHLQHQPDPEDHDSNRAGGGLGGGSGGHFSTDHHHDDGSHQGLDLVAAAANSGQGDLVGRRPRGRPAGSKNKPKPPVII TRESANTLRAHILEVGNGCDVFECVANYARRRQRGICILSGAGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVG GSVVGELTAAGPVIVIAASFTNVAYERLPLDEDDQLQMQSGGGGGGGGGAGGGGVGNSPFNESGTPSGGLPFFNLPLNMTANVQLPVDGWGGNSGGRVPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G142800 [exp]	0	1
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	1.41	0.9840
AT1G05577			Domain of unknown function (DU...		Potri.009G024900 [exp]	2.44	0.9763
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.015G020000 [exp]	3.46	0.9695	NAC021
AT1G52190			Major facilitator superfamily ...		Potri.018G041700 [exp]	4.47	0.9687
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G048400 [exp]	6.00	0.9679
AT4G15960			alpha/beta-Hydrolases superfam...		Potri.010G010700 [exp]	6.32	0.9667
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048100 [exp]	6.48	0.9678
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.006G247700 [exp]	8.00	0.9605	Pt-WGA3.1
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.006G089800 [exp]	8.48	0.9655
AT3G05858			unknown protein		Potri.010G003900 [exp]	8.48	0.9538

Compare expression of checked genes

Potri.001G142800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.