Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17830 744 / 0 Peptidase M20/M25/M40 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G091100 [exp] 845 / 0 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Potri.003G045200 [exp] 43 / 0.0004 AT1G51760 680 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Potri.005G178900 [exp] 42 / 0.0007 AT1G44350 604 / 0.0 IAA-leucine resistant (ILR)-like gene 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040090 [exp] 764 / 0 AT4G17830 740 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Lus10030957 [exp] 756 / 0 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2) Lus10010715 [exp] 49 / 4e-06 AT1G51760 463 / 1e-161 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030828 [exp] 48 / 1e-05 AT1G51760 489 / 6e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10030659 [exp] 47 / 2e-05 AT1G51760 489 / 8e-172 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1) Lus10026565 [exp] 45 / 6e-05 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10013848 [exp] 43 / 0.0006 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2) Lus10037601 [exp] 42 / 0.0006 AT1G51760 649 / 0.0 JASMONIC ACID RESPONSIVE 3, IAA-ALANINE RESISTANT 3, peptidase M20/M25/M40 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [poplar] [flax] Peptidase_MH PF01546 [poplar] [flax] Peptidase_M20 Peptidase family M20/M25/M40 CL0035 [poplar] [flax] PF07687 [poplar] [flax] M20_dimer Peptidase dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.001G143200.1 pacid=42790100 polypeptide=Potri.001G143200.1.p locus=Potri.001G143200 ID=Potri.001G143200.1.v4.1 annot-version=v4.1 ATGGCTGATATTGAACAAGTCCTAGGAGACCTGAACAAGGATTCCTTTGTCTCACTCTTGACAAACCTCATTGGAGAGTCCAAATATGTCCAAAACAACC CCCCAGAGCTGATCCCAGAAGAAGACAGGGTTGTCAAGCATGTGTTGAATTCTCTTCTTCCTTACAGCACCACCACTGGAGGAGGTCCACTGATTGTGAA TCATGTCTCTTATTTCCCTCAAAGAGGCAATCTTATTGTGGAGTACCCTGGTACCGAACAAGGAAAGATCTTGTCTTTTGTTGGCATGCACATGGATGTT GTCACTGCCAATCCCAATGACTGGGAGTTTGATCCATTTTCATTGAGCATCGATGGGGAAAAACTTCGTGGCCGTGGAACCACTGATTGTTTGGGACATG TTGCCCTTGTGACTGAACTGATGAAGAAGTTGGGGGAGACAAAGCCAAAATTGAAGTCAACAGTAGTTGCAGTCTTTATAGCTAATGAGGAGAATTCTGC CATAACAGGGGTTGGCGTGGATGCACTTGTAAAAGATGGTCTGCTCAATAAGCTGAAGGGAGGTCCTCTATATTGGATTGACACAGCAGATAAACAACCT TGCATTGGCACTGGTGGTATGATTCCTTGGAAACTTCATGTCACTGGGAAACTTTTTCATAGTGGTTTACCGCATAAGGCTATAAATCCTTTGGAGCTGG GCATGGAGGCTCTTAAAGAGATACAGTCACGATTTTACAGGGACTTTCCACCTCATAAGGAAGAGCAAGTATATGGATTTGCAACACCATCAACTATGAA GCCAACTCAATGGAGTTATCCAGGAGGTGGGATCAATCAAATTCCTGCTGAGTGTACAATTTCGGGAGATGTCAGGTTAACTCCCTTCTACAGTGTCGAA GATGTGATGAGCAAACTACAAAAGCATGTGGATGACATAAATGAGAACATTGAGAAGCTTGGCACAAGGGGCCCGGTTTCAAAATATGTATTACCAGAAG AAAACCTAAGGGGGAGTCTTGCTGTGACCTTTGATGAGGCATCGTCAGGAGTTGCCTGTAATCTAAAATCACGTGGCTTTGAAGTGTTGTGTAAAGCAAC TGAAAAGATAGTTGGGCATGTAAAACCGTATTCAATCACAGGGACTCTGCCACTAATTCGAGAGCTGAAAGATGAAGGTTTCGATGTTCAAACTGCAGGC TATGGTTTAATGGCCACATACCATGCCAAGAATGAGTACTGCCTGCTTTCTGATATGTGCCAAGGCTACCAGATTTTTACCAGCATCATCTCTCAATTAG AAAATTGA
AA sequence Show only first row Show all	>Potri.001G143200.1 pacid=42790100 polypeptide=Potri.001G143200.1.p locus=Potri.001G143200 ID=Potri.001G143200.1.v4.1 annot-version=v4.1 MADIEQVLGDLNKDSFVSLLTNLIGESKYVQNNPPELIPEEDRVVKHVLNSLLPYSTTTGGGPLIVNHVSYFPQRGNLIVEYPGTEQGKILSFVGMHMDV VTANPNDWEFDPFSLSIDGEKLRGRGTTDCLGHVALVTELMKKLGETKPKLKSTVVAVFIANEENSAITGVGVDALVKDGLLNKLKGGPLYWIDTADKQP CIGTGGMIPWKLHVTGKLFHSGLPHKAINPLELGMEALKEIQSRFYRDFPPHKEEQVYGFATPSTMKPTQWSYPGGGINQIPAECTISGDVRLTPFYSVE DVMSKLQKHVDDINENIEKLGTRGPVSKYVLPEENLRGSLAVTFDEASSGVACNLKSRGFEVLCKATEKIVGHVKPYSITGTLPLIRELKDEGFDVQTAG YGLMATYHAKNEYCLLSDMCQGYQIFTSIISQLEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17830			Peptidase M20/M25/M40 family p...		Potri.001G143200 [exp]	0	1
AT1G76940			RNA-binding (RRM/RBD/RNP motif...		Potri.015G009000 [exp]	1.41	0.8581
AT5G41970			Metal-dependent protein hydrol...		Potri.003G145900 [exp]	4.47	0.8276
AT3G57280			Transmembrane proteins 14C (.1...		Potri.003G094300 [exp]	6.00	0.8444
AT5G22790		RER1	reticulata-related 1 (.1)		Potri.009G150400 [exp]	8.00	0.8081
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Potri.008G060000 [exp]	10.24	0.8116	Pt-EIF3.1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.002G176000 [exp]	10.67	0.8029
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Potri.006G275300 [exp]	11.00	0.8161	FZF.2
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Potri.003G157700 [exp]	12.24	0.8373	Pt-ARPC2.1
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Potri.001G018800 [exp]	12.64	0.8219
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Potri.014G194700 [exp]	16.97	0.8197

Compare expression of checked genes

Potri.001G143200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.