Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35260 420 / 1e-146 unknown protein AT4G17840 410 / 4e-142 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030958 [exp] 441 / 2e-154 AT2G35260 440 / 3e-154 unknown protein Lus10040089 [exp] 338 / 9e-115 AT2G35260 354 / 4e-121 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [poplar] [flax] Peptidase_U PF02517 [poplar] [flax] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Potri.001G143400.1 pacid=42788642 polypeptide=Potri.001G143400.1.p locus=Potri.001G143400 ID=Potri.001G143400.1.v4.1 annot-version=v4.1 ATGGAGCTGCCGTTACTTTTCCGAACACCGAGCCACTCATCAACTGCAACTGCAACTGCAACCACGTCGTTTAGAGTCGGTGCTTGGTTTTCTAAAACCA GTGACCTTCCGGCTAGTAGAAGGAGATTGAACTTGAGAGAAAATGGAGTCAATAGGATTCAAATACGGTGCAGCAAAGCATCTACAGAGAGAACGGGTGC TGGTAGTGAAGGAATCGAGGAGAGAGAAAGGAGGAGATTCACTGGAAGTGCTATGGAAGTGACTACATTTGATCAGAGCTTTGGCGATGCTGCTTCTGAC TTTCCTTTGTGGGAGAAAATCGGTGCTGTTGTTAGACTCTGTTATGGGATCGGTATATATGGAGGAATGGCGTTGGCAGGACGGTTTATATGTTCAATAA CTGGAATTGATAGCCTGGGAGGTTTTAATCCATCTTTGGATGCATTTCTTGAAGGGCTTGGATATGCAGCTCCACCAGTCATGGCCCTTCTTTTTATACT AGATGATGAAGTCGTGAAGTTGTCGCCTCATGCTCGTGCCATTAGAGATGTGGAGGACGAGGAACTTCGGAATTTCTTTTATGGGATGTCGCCTTGGCAG TTTATTTTAATTGTTGCTGCAAGTTCCGTGGGAGAGGAGCTTTTCTATCGAGCTGCTGTTCAGGGAGCACTGGCTGATATATTTCTAAGGGGAACCAATT TGATGGAAGATGCTCGAGGAATGGCATCGCTGACTGGTGTGCTGCCTCCTTTTGTCCCATTTGCCCAGGCATTTGCAGCTGTTTTAACAGCCGTTCTTAC TGGATCCCTCTATTATGTGGCTACCTCCCCAAAAGATCCTACTTATGTAGTTGCACCAGTTCTGCCATCTTACTCTGGGCGTGAAGATCTGAAAAAGCTA TTTGCAGCCTGGTATGAGAGGAGGCAAATGAAAAAGATCTACTCTCCCCTCCTGGAAGGACTTTTGGCGCTCTATCTAGGTTTTGAATGGATCCAGACAA ATAATATTCTAGCCCCCATCATTACACATGGCATATACTCGGCTGTTGTATTGGGGCATGGCCTTTGGAAAATACACGAGCACCGGAGAAGACTACGCCG GAGAATCCAGCTTCTTAAATCAGAAGAAATGAATTCAAATAAAAGATGA
AA sequence Show only first row Show all	>Potri.001G143400.1 pacid=42788642 polypeptide=Potri.001G143400.1.p locus=Potri.001G143400 ID=Potri.001G143400.1.v4.1 annot-version=v4.1 MELPLLFRTPSHSSTATATATTSFRVGAWFSKTSDLPASRRRLNLRENGVNRIQIRCSKASTERTGAGSEGIEERERRRFTGSAMEVTTFDQSFGDAASD FPLWEKIGAVVRLCYGIGIYGGMALAGRFICSITGIDSLGGFNPSLDAFLEGLGYAAPPVMALLFILDDEVVKLSPHARAIRDVEDEELRNFFYGMSPWQ FILIVAASSVGEELFYRAAVQGALADIFLRGTNLMEDARGMASLTGVLPPFVPFAQAFAAVLTAVLTGSLYYVATSPKDPTYVVAPVLPSYSGREDLKKL FAAWYERRQMKKIYSPLLEGLLALYLGFEWIQTNNILAPIITHGIYSAVVLGHGLWKIHEHRRRLRRRIQLLKSEEMNSNKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35260			unknown protein		Potri.001G143400 [exp]	0	1
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G019000 [exp]	3.46	0.9700
AT4G18810			NAD(P)-binding Rossmann-fold s...		Potri.004G061200 [exp]	5.74	0.9697
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	7.61	0.9698
AT2G32830		PHT1;5, PHT5	PHOSPHATE TRANSPORTER 5, phosp...		Potri.001G318500 [exp]	8.36	0.9570	Pt-PHT5.1,PtrPHT1-12
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Potri.005G085400 [exp]	8.66	0.9670
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	9.38	0.9694
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.019G091300 [exp]	9.48	0.9546
AT5G53110			RING/U-box superfamily protein...		Potri.003G139900 [exp]	10.19	0.9581
AT1G11340			S-locus lectin protein kinase ...		Potri.004G028466 [exp]	10.19	0.9502
AT4G00030			Plastid-lipid associated prote...		Potri.014G058400 [exp]	15.55	0.9531

Compare expression of checked genes

Potri.001G143400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.