Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17950 244 / 4e-77 AT-hook AT hook motif DNA-binding family protein (.1) AT5G46640 226 / 1e-70 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 222 / 1e-69 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G12080 197 / 6e-60 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G25320 198 / 1e-59 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 190 / 6e-57 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 178 / 2e-52 AT-hook AT hook motif DNA-binding family protein (.1.2) AT5G62260 172 / 1e-49 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 169 / 3e-49 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 171 / 4e-49 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090900 [exp] 491 / 2e-174 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 238 / 4e-75 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.012G129500 [exp] 213 / 4e-66 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.005G256500 [exp] 213 / 2e-65 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.002G148600 [exp] 207 / 4e-64 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G158200 [exp] 206 / 1e-63 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G070000 [exp] 204 / 7e-63 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G082100 [exp] 197 / 6e-60 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.001G104900 [exp] 196 / 1e-59 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011067 [exp] 333 / 7e-113 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10030962 [exp] 333 / 4e-112 AT4G17950 235 / 2e-73 AT hook motif DNA-binding family protein (.1) Lus10040085 [exp] 331 / 2e-111 AT4G17950 241 / 9e-76 AT hook motif DNA-binding family protein (.1) Lus10000315 [exp] 326 / 7e-110 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10004022 [exp] 196 / 2e-59 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 196 / 3e-59 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004318 [exp] 191 / 1e-57 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10030381 [exp] 191 / 1e-57 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10037858 [exp] 191 / 2e-57 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10008533 [exp] 188 / 3e-56 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.001G143500.1 pacid=42791958 polypeptide=Potri.001G143500.1.p locus=Potri.001G143500 ID=Potri.001G143500.1.v4.1 annot-version=v4.1 ATGGACTCGAGAGAACCGCCACCGCCACAGCCACCACCACAACAACTACAGCCACCGCATGCACCACCACCACCACAATCACAATCAAACATGATTCCGG GCCCTATCTCCTATCCAGCAACCGCTTCTCCTCACCTGATCAACAACCGCAGTATATCTCCTCGGAATGCTGCTATTGGTGGTGGCTTCCCCTTCAATCA GATGTCAGCCCAGCGGCTGCAATCCAAGCCTGAAGGTGCTTTTGATGGATCGTCGCCCACATCTTCTTCAGGGATGAGGTTTAGTATAGAGCCCGCCAAG AAGAAGCGCGGGAGGCCCAGGAAGTACACACCTGACGGTAACATTGCCTTGGGTTTGTCACCCACCCCCATTCATTCAGGAATGTCGGCTGGTCAAGCCG ATTCTAGTGGTGGAGCCGGAAGCGGTGTCATGCCTGATGTGGCATCTGAGCATCCCTCTAAAAAGCATAGAGGAAGGCCGCCAGGTTCTGGGAAGAAGCA GCTTGATGCCTTAGGTGGGACTGGAGGCGTAGGGTTTACACCGCATGTCATTACGGTGAAAGCAGGAGAGGACATTGCATCAAAGATTATGGCTTTTTCA CAGCAAGGGCCACGGACAGTTTGTATTCTCTCTGCAAATGGTGCCATCTGCAATGTTACACTTCGCCAACCAGCAATGTCTGGTGGTTCTGTGACATATG AGGGCCGCTTTGAAATCATTTCTCTATCAGGCTCCTTCTTGCTTTCTGAAAGTAATGGTAGTCGGAGCAGAACTGGTGGTTTGAGTGTGTCGCTGGCTGG ATCAGATGGTCGGGTTTTGGGCGGGGGAGTTGCTGGAATGCTAACGGCAGCTTCTGCTGTACAGGTAATTTTGGGCAGCTTCATTGCAGATGGGAAAAAA TCAAATTCAAAATCATTAAAATCTGGACCTTCCTCAACACCCCCACCCCAGATGTTGAATTTTGGTGCTCCATTAACCACAGCTAGCCCTCCCTCTCGAG GGGGCTCTAGCGAGTCTTCGGATGAGAATGGTGGCAGTCCTGTTAATCGGACTCCTGGAATTTATGGTAACCCTAGTCAACCCATTCATAATATGCAGAT GTACCAACTATGGGGTGGCCAAAATCCAGAGTGA
AA sequence Show only first row Show all	>Potri.001G143500.1 pacid=42791958 polypeptide=Potri.001G143500.1.p locus=Potri.001G143500 ID=Potri.001G143500.1.v4.1 annot-version=v4.1 MDSREPPPPQPPPQQLQPPHAPPPPQSQSNMIPGPISYPATASPHLINNRSISPRNAAIGGGFPFNQMSAQRLQSKPEGAFDGSSPTSSSGMRFSIEPAK KKRGRPRKYTPDGNIALGLSPTPIHSGMSAGQADSSGGAGSGVMPDVASEHPSKKHRGRPPGSGKKQLDALGGTGGVGFTPHVITVKAGEDIASKIMAFS QQGPRTVCILSANGAICNVTLRQPAMSGGSVTYEGRFEIISLSGSFLLSESNGSRSRTGGLSVSLAGSDGRVLGGGVAGMLTAASAVQVILGSFIADGKK SNSKSLKSGPSSTPPPQMLNFGAPLTTASPPSRGGSSESSDENGGSPVNRTPGIYGNPSQPIHNMQMYQLWGGQNPE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Potri.001G143500 [exp]	0	1
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.016G119700 [exp]	1.41	0.8808
AT3G49180		RID3	ROOT INITIATION DEFECTIVE 3, T...		Potri.014G027200 [exp]	4.24	0.8388
AT3G03060			P-loop containing nucleoside t...		Potri.001G458200 [exp]	5.47	0.8376
AT4G32720		ATLA1	La protein 1 (.1.2)		Potri.006G241800 [exp]	8.36	0.8215
AT5G67240		SDN3	small RNA degrading nuclease 3...		Potri.007G048000 [exp]	10.19	0.7907
AT4G23620			Ribosomal protein L25/Gln-tRNA...		Potri.001G097801 [exp]	10.39	0.8003
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.004G169500 [exp]	10.48	0.7849
AT1G42440			unknown protein		Potri.005G250100 [exp]	24.49	0.7632
AT4G21130		EMB2271	EMBRYO DEFECTIVE 2271, Transdu...		Potri.007G107900 [exp]	25.49	0.7752
AT1G25260			Ribosomal protein L10 family p...		Potri.011G156300 [exp]	27.23	0.7962

Compare expression of checked genes

Potri.001G143500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.