Plant FIBer expression Database

Potri.001G144000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35320 415 / 9e-147 ATEYA EYES ABSENT homolog (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.001G144000.1 pacid=42793531 polypeptide=Potri.001G144000.1.p locus=Potri.001G144000 ID=Potri.001G144000.1.v4.1 annot-version=v4.1
ATGGCTGAAAGCTCAATAATTTCTGATCAAAAGGTAGAAGCTTTGGCAAAGAAAGGCATGGATCGGATAAAAAAGGTGTATGTTTGGGACATGGATGAGA
CCCTTATATTGCTCAAGTCTTTGCTGAACGGGACTTATGCACAGGGTTTCAATGGCTTAAAGGATGTGCAGAAGGGAATAGAAATTGGTAAGATGTGGGA
GAAGCACATTCTTCAAATCTGCGATGATTTATTCTTCTATGAACAAGTAGAGAACTACAATAAGCCTTTTCTTGATGCCATGAGTCAGTATGATGATGGG
CTTGATCTTTCTAATTATGATTTCAACCAAGATGGATTTAGTCCTCCTTCTGATGATGTAAACAAAAAAAAGCTAGCGTACAGACACCGAGCCATAGCCA
ACAAGTACAAACAGGGTTTGCATAATATTCTTGATCAAGAGATGATCAATCTATGGGAGGAATTATATAATTTGACTGATGAATATACAGATAGATGGCT
CTCTTCAGCGCGGGCTTTCTTGGAACAGTGTTCTGGCTGGAAGGAAGACCCTACTCGTTGTCTTGCCTCTACTGATGGGATCATCAATCACACCGATGCC
AAGTTTGAGCCCATTAATGTTTTAGTGACTTCTGGATCATTGATACCCAGCCTCGTAAAATGTTTACTTTTTCGACTTGACAATTCAATAGCACATGAAA
ATGTCTACAGCTCATGGGAAGTGGGAAAACCTCAATGTTTTCAGTGGATCAAGGAACGATTTAATGGTCCAAATGTCCATTTTTGTGTAATTGGGGATGG
ATGGGAAGAGTGTGAAGGTGCACAGGCCATGCAATGGCCATTTGTCAAGATTGGTATGCACCCAGGTGGGGATCACCGTTTTCCAGGCCTTACGTTGAGA
ACTCTTGGCTACTACTTTGCTGTTGTGTACGGGGATCCTGATGCTGAAAATAATGAAGATGAATCATGA
AA sequence
>Potri.001G144000.1 pacid=42793531 polypeptide=Potri.001G144000.1.p locus=Potri.001G144000 ID=Potri.001G144000.1.v4.1 annot-version=v4.1
MAESSIISDQKVEALAKKGMDRIKKVYVWDMDETLILLKSLLNGTYAQGFNGLKDVQKGIEIGKMWEKHILQICDDLFFYEQVENYNKPFLDAMSQYDDG
LDLSNYDFNQDGFSPPSDDVNKKKLAYRHRAIANKYKQGLHNILDQEMINLWEELYNLTDEYTDRWLSSARAFLEQCSGWKEDPTRCLASTDGIINHTDA
KFEPINVLVTSGSLIPSLVKCLLFRLDNSIAHENVYSSWEVGKPQCFQWIKERFNGPNVHFCVIGDGWEECEGAQAMQWPFVKIGMHPGGDHRFPGLTLR
TLGYYFAVVYGDPDAENNEDES

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G35320 ATEYA EYES ABSENT homolog (.1) Potri.001G144000
[exp]
0 1
AT1G71750 HGPT Hypoxanthine-guanine phosphori... Potri.005G198400
[exp]
1.00 0.8816
AT1G20950 Phosphofructokinase family pro... Potri.006G024500
[exp]
2.44 0.8773
AT5G20510 Alfin AL5 alfin-like 5 (.1) Potri.018G050200
[exp]
4.58 0.8255
AT5G67260 CYCD3;2 CYCLIN D3;2 (.1) Potri.007G048300
[exp]
5.65 0.8304 Pt-CYCD3.3
Potri.010G058600
[exp]
5.91 0.8290
AT1G31335 unknown protein Potri.006G127000
[exp]
7.54 0.8443
AT1G21780 BTB/POZ domain-containing prot... Potri.005G178400
[exp]
9.00 0.7601
AT4G14420 HR-like lesion-inducing protei... Potri.002G040900
[exp]
12.00 0.7334
AT2G38730 Cyclophilin-like peptidyl-prol... Potri.001G030000
[exp]
12.24 0.8276
AT2G27800 Tetratricopeptide repeat (TPR)... Potri.018G093700
[exp]
13.26 0.7950

Potri.001G144000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.