Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35330 780 / 0 RING/U-box superfamily protein (.1.2) AT1G32530 666 / 0 RING/U-box superfamily protein (.1) AT4G03000 192 / 1e-51 RING/U-box superfamily protein (.1.2) AT1G03365 184 / 7e-49 RING/U-box superfamily protein (.1) AT1G73950 56 / 7e-08 Transmembrane Fragile-X-F-associated protein (.1) AT1G18470 53 / 6e-07 Transmembrane Fragile-X-F-associated protein (.1.2) AT1G68820 52 / 1e-06 Transmembrane Fragile-X-F-associated protein (.1) AT5G23110 48 / 4e-05 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G39050 45 / 0.0002 Kinesin motor family protein (.1) AT5G03200 44 / 0.0002 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090000 [exp] 1146 / 0 AT2G35330 726 / 0.0 RING/U-box superfamily protein (.1.2) Potri.008G198300 [exp] 285 / 2e-84 AT4G03000 338 / 8e-103 RING/U-box superfamily protein (.1.2) Potri.010G027900 [exp] 279 / 4e-82 AT4G03000 453 / 2e-146 RING/U-box superfamily protein (.1.2) Potri.015G050300 [exp] 54 / 3e-07 AT1G18470 748 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.008G116400 [exp] 53 / 7e-07 AT1G68820 667 / 0.0 Transmembrane Fragile-X-F-associated protein (.1) Potri.012G060100 [exp] 50 / 5e-06 AT1G18470 673 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Potri.001G074800 [exp] 49 / 2e-05 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.014G138000 [exp] 47 / 5e-05 AT1G63900 548 / 0.0 DIAP1-like protein 1, E3 Ubiquitin ligase family protein (.1.2) Potri.005G093000 [exp] 47 / 6e-05 AT5G23110 5932 / 0.0 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000899 [exp] 544 / 0 AT2G35330 463 / 2e-158 RING/U-box superfamily protein (.1.2) Lus10004557 [exp] 541 / 0 AT2G35330 473 / 2e-162 RING/U-box superfamily protein (.1.2) Lus10041246 [exp] 268 / 4e-78 AT4G03000 491 / 5e-161 RING/U-box superfamily protein (.1.2) Lus10021954 [exp] 262 / 1e-75 AT4G03000 485 / 1e-158 RING/U-box superfamily protein (.1.2) Lus10041245 [exp] 257 / 7e-74 AT4G03000 465 / 4e-151 RING/U-box superfamily protein (.1.2) Lus10041244 [exp] 253 / 2e-72 AT4G03000 492 / 3e-161 RING/U-box superfamily protein (.1.2) Lus10021953 [exp] 94 / 6e-20 AT4G03000 177 / 1e-47 RING/U-box superfamily protein (.1.2) Lus10042969 [exp] 56 / 6e-08 AT1G18470 698 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10032471 [exp] 56 / 6e-08 AT1G18470 701 / 0.0 Transmembrane Fragile-X-F-associated protein (.1.2) Lus10035057 [exp] 46 / 7e-05 AT1G68820 639 / 0.0 Transmembrane Fragile-X-F-associated protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13920 [poplar] [flax] zf-C3HC4_3 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.001G144200.1 pacid=42789261 polypeptide=Potri.001G144200.1.p locus=Potri.001G144200 ID=Potri.001G144200.1.v4.1 annot-version=v4.1 ATGGGCTGCACTGCTAGAGAAAAACATGTCCGTGCAAATCGGAGGGTGCCCCGCCCTGCCAAATACACTGAATTCGATCCCTGTATTTATGCCAAAACCC TACTTGAATCGGGTCTCAAACCTTTAGCGTACCATCTTGGTCTTCACGATCCAACCCATAACAACAACAACAACTCCAATTCTAATTTTGATGATAACGG ATGGGGCTACTGTACTGAGGAGCAATTGGAAGAAATTCTTTTAAAAAATCTTGAATTCTTATATAAAGAAGCTATTTCTAAGCTTGTTGGATTGGGTTAT GATGAGGATGTTGCGTTAAAGGCAATCTTGCGTAACGGGTATTGTTATGGCGGCATGGATGTGCTGACTAATATATTGCATAATTCATTGGCTTATTTGA ATAGTAATAATTGTGGTAGCAGTAGTAATGGAAATGTAGATGAAACGGAGCTTGTTTTTAATGATTTAAGGCAATTAGAGGAGTATTCCCTTGCGGGTAT GGTTTGTTTGTTGCAACAGGTTAAGCCACATTTTAGTAAAGGTGATGCTATGTGGTGTTTGTTGATGAGTGATCTTCATGTGGGTAGAGCAAGTGCGCTT GAAATTCCTGTCACGAGTTTTCCGGGGAATGGGAGTGGTAATGTTCAGGGTAGTGTAGAGAGTGTTAGTGGGGTTGATAATGGGGTTGGTGTGGTGGCAC CAGCATTGTGTAGGTTTCATGGAGGATGGGGGTTTGGAAGTGGGGGAGGATCAGAGTTTTCACCTGATGGGTTTTTCTCATATAGTGCAGAAATGACTTT GCAAAAGGATATTGAGTGTCCTAAAAGGTTTAATCTATCGCCTTCAATGAAGTCTTTATTGAAAAGGAATGTTGCAATGTTTGCTGCTGGTTTTAGAGCT AATTCGAAACAGATGCAGATGCAACCTCGGGTGCAAGTTCAGGCTTGTGTGAGTGTTAGTGCAGGTGGGGATGCTGCCTCAGTTGCAAAGGCAGATGAAG GGATGATCAAGAAGGGTGAGGAGTCTCATGATTCAAAGAACAAAGAAGGAATTAGTTCAATGCTGAGCAAGCTTCAAAATTTGAAGCTTGATGAGGAGCT TGTAGGAGAAGATCAGAAGGATGATATGATAGTCACCCTGCTTCAACATATAAAGGATTTGGATAAACAAGTGAAGGAGCGGAAGGAGTGGGCGCATCAG AAGGCAATGCAAGCTGCCAGAAAGCTTAGTAGTGATTTAACAGAGCTTAAAATGTTGAGGATGGAAAGAGAGGAGACCCAGCGATTAAAGAAGGGGAAAC AGACTCTGGAGGATTCAACTGCGAAGAGGCTGTCTGAGATGGAGAATGCTTTAAGGAAGGCTAGTGGTCAAGTGGACTGGGCAAATGCAGCTGTGAGACG GCTAGAGACAGAGAACGCAGAAATCAGGGCAGAGATGGAGGCTTCTAAGTTAAGTGCATCAGAGTCAGTAACAACATGTTTAGAGGTAGCGAAGAGGGAG AAAAAGTGCCTGAAGAGGCTTTTGGCTTGGGAGAAACAGAAAACTAAGCTGCAGGCTGAGATTGCAGATGAGAAAGAGAATATCAAGGAGTTGCAACAAT GTTTGGCCAATATTGAGCATGCTCAGAAAGAAGCTGAGGTGAAGTGGAGGCACGAAGTGAAGGCGAAAGAGCAGGCTTTGGCCCTAGTGGAAGAGGAAAG ATGCTCCAAGGAAGCGACCGAGGCTGAGAATAAAAGGAAGCTGGATGCTCTGCGCCGTAAGATAGAAATCGACTTCCAGCGCCACAAGGATGATCTCCAA AGACTTGAACAAGAGTTTTCACGTCTGAAATCTGCTGCAGAGTCCACTGAGCTGAATTATCAATCAAATGCATTACCATCAGGAAAGTCTGAGAGGACAA AGCCCCAAGGAGGAACAATTGCGAGGTTGCTTCATGAAATAGAGAAACTGGAAAATTCATCCGAGAAAGGAGCCAACTGTGACCGGAAATGCATGATTTG TATGAAAGATGAAGTCTCTATTGTTTTACTTCCTTGTGCTCACCAAGTTATATGTGCAAATTGCAGTGGCAATTACGGGAAGAAGGGGAAAGCTACTTGT CCGTGCTGCCGGGTTCCAGTTGAACAGAGAATACGTGTTTTTGGTGCGAGTTCATAG
AA sequence Show only first row Show all	>Potri.001G144200.1 pacid=42789261 polypeptide=Potri.001G144200.1.p locus=Potri.001G144200 ID=Potri.001G144200.1.v4.1 annot-version=v4.1 MGCTAREKHVRANRRVPRPAKYTEFDPCIYAKTLLESGLKPLAYHLGLHDPTHNNNNNSNSNFDDNGWGYCTEEQLEEILLKNLEFLYKEAISKLVGLGY DEDVALKAILRNGYCYGGMDVLTNILHNSLAYLNSNNCGSSSNGNVDETELVFNDLRQLEEYSLAGMVCLLQQVKPHFSKGDAMWCLLMSDLHVGRASAL EIPVTSFPGNGSGNVQGSVESVSGVDNGVGVVAPALCRFHGGWGFGSGGGSEFSPDGFFSYSAEMTLQKDIECPKRFNLSPSMKSLLKRNVAMFAAGFRA NSKQMQMQPRVQVQACVSVSAGGDAASVAKADEGMIKKGEESHDSKNKEGISSMLSKLQNLKLDEELVGEDQKDDMIVTLLQHIKDLDKQVKERKEWAHQ KAMQAARKLSSDLTELKMLRMEREETQRLKKGKQTLEDSTAKRLSEMENALRKASGQVDWANAAVRRLETENAEIRAEMEASKLSASESVTTCLEVAKRE KKCLKRLLAWEKQKTKLQAEIADEKENIKELQQCLANIEHAQKEAEVKWRHEVKAKEQALALVEEERCSKEATEAENKRKLDALRRKIEIDFQRHKDDLQ RLEQEFSRLKSAAESTELNYQSNALPSGKSERTKPQGGTIARLLHEIEKLENSSEKGANCDRKCMICMKDEVSIVLLPCAHQVICANCSGNYGKKGKATC PCCRVPVEQRIRVFGASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35330			RING/U-box superfamily protein...		Potri.001G144200 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.016G012500 [exp]	3.16	0.8907
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.002G160600 [exp]	4.24	0.8875
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	5.00	0.9005
AT3G51580			unknown protein		Potri.006G108400 [exp]	12.96	0.8820
AT4G00440			Protein of unknown function (D...		Potri.002G160000 [exp]	14.69	0.8655
AT1G34550		EMB2756	EMBRYO DEFECTIVE 2756, Protein...		Potri.019G084100 [exp]	15.16	0.8840
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Potri.016G119100 [exp]	16.00	0.8849
AT1G27210			ARM repeat superfamily protein...		Potri.008G192100 [exp]	18.76	0.8504
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.018G142400 [exp]	20.12	0.8043
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	23.43	0.8803

Compare expression of checked genes

Potri.001G144200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.