Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17970 634 / 0 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 599 / 0 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 558 / 0 Aluminium activated malate transporter family protein (.1) AT3G18440 289 / 1e-90 ATALMT9 aluminum-activated malate transporter 9 (.1) AT4G00910 276 / 8e-87 Aluminium activated malate transporter family protein (.1) AT1G18420 264 / 3e-81 Aluminium activated malate transporter family protein (.1) AT1G08440 256 / 9e-79 Aluminium activated malate transporter family protein (.1) AT2G17470 247 / 5e-75 AtALMT6, ALMT6 ALuminium activated Malate Transporter 6, Aluminium activated malate transporter family protein (.1) AT1G25480 246 / 1e-74 Aluminium activated malate transporter family protein (.1) AT1G08430 238 / 3e-72 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G145000 [exp] 306 / 2e-98 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.001G085900 [exp] 298 / 4e-95 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 288 / 4e-91 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.015G053400 [exp] 285 / 6e-89 AT3G18440 681 / 0.0 aluminum-activated malate transporter 9 (.1) Potri.001G217400 [exp] 277 / 2e-87 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 275 / 3e-86 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.016G070100 [exp] 273 / 1e-85 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.005G208500 [exp] 270 / 2e-85 AT4G17970 228 / 4e-69 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.010G127400 [exp] 271 / 2e-84 AT3G18440 588 / 0.0 aluminum-activated malate transporter 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030975 [exp] 711 / 0 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 695 / 0 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10004556 [exp] 669 / 0 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10027657 [exp] 271 / 1e-83 AT3G18440 711 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10021272 [exp] 265 / 2e-82 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10013577 [exp] 264 / 4e-82 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10034301 [exp] 253 / 5e-77 AT3G18440 555 / 0.0 aluminum-activated malate transporter 9 (.1) Lus10001528 [exp] 251 / 5e-77 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 248 / 4e-76 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10024710 [exp] 234 / 4e-71 AT3G18440 296 / 1e-94 aluminum-activated malate transporter 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [poplar] [flax] FUSC PF11744 [poplar] [flax] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Potri.001G144300.1 pacid=42793096 polypeptide=Potri.001G144300.1.p locus=Potri.001G144300 ID=Potri.001G144300.1.v4.1 annot-version=v4.1 ATGGAGCTGGTCATGCCGATATCAGCTAAGGAGAATTTGAAGAAAAACATGAAAGCTTTTTCTGAGAAATCGAAAAGGTTTCCTGGTCTGTTGTGGCGAA CAGTTTGGAGAGTTGGTCGGGATGATCCTAGAAGAGTTGTCCATGCTTTGAAAGTTGGCTTGTCTTTGACATTGGTTTCCTTGTTGTATCTTCTGGAGCC ATTGTTCAAAGGGATAGGCCAGAATGCTATTTGGGCCGTCATGACTGTTGTTGTTGTGCTTGAGTTCACTGCAGGAGCAACCTTGTGCAAAGGACTTAAT AGAGGCTTAGGAACCCTCTTAGCAGGGTCTTTGGCATTTCTCACTGGGTACATTGCAGAAAAAACTGGGCTCGTCTTTCGAGCTGTTTTCATTGGGGCCG CAGTTTTTGTGATAGGAACTGCAACAACATACATGAGGTTCTTTCCCTATATAAAGAGGAACTATGACTATGGTGTTCTCATATTCCTCTTGACCTTTAA TCTGATAACCGTGTCAAGCTATCGTGTGAGCAATGTATTAAAGATTGCACATGAACGCTTTTACACCATTGCCATTGGTTGTGGTGTTTGCCTAGTAATG ACTCTTTTTATATTCCCCATTTGGTCCGGAGAAGACCTCCATAATTCCACGGTGATCAAGCTTGAAGGGCTAGCTAAATCTATAGAAGCTTGTGTCAATG AATATTTTAATGATGTTGAGAAAGAAAAGACCCAAGATAAGTCACCCGAGGATCCCATTTACAAGGGATACAAGGCAGTATTAGACTCAAAATCACAAGA TGAAACTCTAGCATTACATGCAAGTTGGGAGCCAAGACACTCAAGGCATTGCAGATATCCTTGGCAACAGTATGTGAAACTAGGAGCCGTTCTTCGTCAT TTCGGTTACACTGTTGTAGCTTTACATGGATGTTTGCAATCTGAAATTCAGACACCACAACATTGTCGTGTACTCTTCAAAGATCCATGCATTCGTGTCA CCAATGAATTATCAAAAGCATTAATGGAGCTTGCCAATAGTATAAGGAATCGACGCCATTGCTCTCCTGAGATACTCTCCGATAATCTCCACGAAGCCTT GCAAGACCTCAACAACGCCCTAAAGTCTCAACCAAGACTTTTCCTGGGCTCCAACAATAACCAAGCCACCAACATGCTAGCCGTAGCAGCTGCACATGCT AATTCTAGCCAAAAGCGTGAAAAATATAATGGAGTCTCGTTACCAAGTTTCAAGACCGACAATTCTGCATTACTCGAATGGAAATCTAAAAGGATGAATA ATGAACATTCAAGATCGGAAGCAGCAGAGAGGAAGGTGTTGAGGCCACAACTGAGTAAAATAGCTATCACAAGCCTTGAGTTCTCGGAGGCACTTCCATT CGCGGCATTCGCTTCTTTGCTAGTAGAGACGGTGGCAAGGTTAGATAATATTATCGAGGAGGTTGAAGAATTGGGAAGGATAGCATGCTTTAAAGAGTTT AAACCCGGAGATGAGGTTATTGTAAATTTTAAAACCCAAAAGGTTAATGTTACGCTCAATCATTTTTCTTCTCAGGGGGGAGAATGA
AA sequence Show only first row Show all	>Potri.001G144300.1 pacid=42793096 polypeptide=Potri.001G144300.1.p locus=Potri.001G144300 ID=Potri.001G144300.1.v4.1 annot-version=v4.1 MELVMPISAKENLKKNMKAFSEKSKRFPGLLWRTVWRVGRDDPRRVVHALKVGLSLTLVSLLYLLEPLFKGIGQNAIWAVMTVVVVLEFTAGATLCKGLN RGLGTLLAGSLAFLTGYIAEKTGLVFRAVFIGAAVFVIGTATTYMRFFPYIKRNYDYGVLIFLLTFNLITVSSYRVSNVLKIAHERFYTIAIGCGVCLVM TLFIFPIWSGEDLHNSTVIKLEGLAKSIEACVNEYFNDVEKEKTQDKSPEDPIYKGYKAVLDSKSQDETLALHASWEPRHSRHCRYPWQQYVKLGAVLRH FGYTVVALHGCLQSEIQTPQHCRVLFKDPCIRVTNELSKALMELANSIRNRRHCSPEILSDNLHEALQDLNNALKSQPRLFLGSNNNQATNMLAVAAAHA NSSQKREKYNGVSLPSFKTDNSALLEWKSKRMNNEHSRSEAAERKVLRPQLSKIAITSLEFSEALPFAAFASLLVETVARLDNIIEEVEELGRIACFKEF KPGDEVIVNFKTQKVNVTLNHFSSQGGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17970		ATALMT12, ALMT1...	"aluminum-activated, malate tr...		Potri.001G144300 [exp]	0	1
AT2G27690		CYP94C1	"cytochrome P450, family 94, s...		Potri.013G075600 [exp]	1.00	0.9839
AT2G28260		ATCNGC15	cyclic nucleotide-gated channe...		Potri.009G010700 [exp]	2.82	0.9480	CNGC15.1
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G152500 [exp]	3.16	0.9704
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125100 [exp]	3.46	0.9535
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.009G113600 [exp]	6.00	0.9044	Pt-SORT2.2,PtrPLT
AT2G30300			Major facilitator superfamily ...		Potri.013G154000 [exp]	6.48	0.9432
AT3G47570			Leucine-rich repeat protein ki...		Potri.017G145200 [exp]	6.92	0.9414
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007300 [exp]	8.30	0.9214
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.011G025300 [exp]	9.89	0.9417
					Potri.007G119100 [exp]	10.09	0.9344

Compare expression of checked genes

Potri.001G144300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.