Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17980 318 / 2e-108 NAC ANAC071 NAC domain containing protein 71 (.1) AT5G46590 301 / 2e-101 NAC ANAC096 NAC domain containing protein 96 (.1) AT1G32510 271 / 1e-89 NAC ANAC011 NAC domain containing protein 11 (.1) AT1G65910 240 / 2e-73 NAC ANAC028 NAC domain containing protein 28 (.1) AT3G17730 226 / 1e-72 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G17260 228 / 2e-70 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G03200 226 / 9e-70 NAC ANAC045 NAC domain containing protein 45 (.1) AT1G54330 219 / 5e-69 NAC ANAC020 NAC domain containing protein 20 (.1) AT3G10500 194 / 5e-57 NAC ANAC053 NAC domain containing protein 53 (.1) AT4G35580 193 / 1e-56 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089800 [exp] 684 / 0 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1) Potri.015G030200 [exp] 227 / 5e-73 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.010G174600 [exp] 230 / 1e-72 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.008G081500 [exp] 229 / 2e-72 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.012G038100 [exp] 222 / 2e-70 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1) Potri.004G081000 [exp] 230 / 2e-69 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.017G139500 [exp] 229 / 4e-69 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.002G061300 [exp] 204 / 3e-60 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.005G200100 [exp] 199 / 3e-58 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030978 [exp] 324 / 3e-109 AT4G17980 273 / 6e-91 NAC domain containing protein 71 (.1) Lus10035373 [exp] 323 / 7e-109 AT4G17980 280 / 2e-93 NAC domain containing protein 71 (.1) Lus10026373 [exp] 236 / 1e-75 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10042284 [exp] 234 / 6e-75 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 234 / 6e-71 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 233 / 4e-69 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2) Lus10010959 [exp] 226 / 2e-68 AT1G65910 389 / 9e-128 NAC domain containing protein 28 (.1) Lus10017915 [exp] 186 / 4e-56 AT1G71930 314 / 4e-107 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10010148 [exp] 189 / 1e-54 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10028713 [exp] 188 / 3e-54 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.001G144400.5 pacid=42788193 polypeptide=Potri.001G144400.5.p locus=Potri.001G144400 ID=Potri.001G144400.5.v4.1 annot-version=v4.1 ATGGGAGGGGCTTCATTGCCTCCGGGATTTCGTTTTCATCCAACTGATGAGGAATTGGTAGGGTATTACCTGCAAAGGAAAGCTCAAGGGCTTGAAATTG AGCTTGAAGTGATCCCCGTGATCGATTTGTACAAATTTGATCCATGGGAATTGCCAGAAAAGTCATTCCTGCCGAAACGGGATATGGAGTGGTTCTTTTT CTGTCCCAGGGACCGTAAGTATCCAAATGGTTCAAGAACAAACAGGGCCACTAAATCTGGCTACTGGAAGGCTACTGGAAAAGACCGTAAAGTTGTCTGT AAATCTGCCGTGACTGGGTATAGAAAGACCCTAGTTTTCTATCGCGGACGGGCTCCTTTAGGAGATAGGACTGACTGGGTAATGCATGAGTATCGCCTTT GCGATGATATTTCTCAAGGATCACCCAATCTTAAGGGAGCTTTTGCTTTGTGCCATGTTGTTAAAAAGAACGAGCAAGGTCTGAAGATAAGCGATTCCCA AGGAGAGCCTAAAGCCAAACAGGTCGGCAGTAGCTCGAGCAATGTGGATTTCACCTCAGCTGTAATCTCGAACGAGCCTTCGAACATCTCATTTGACATG TCTTCTCAAGCAAGTTACCTGTATAACAATGAGAGTCGATATTCGAGTCCTATCACTTCTCCTTATCAAGTCGCACCAATGTCAGACTTTGAGCCAGCTG CTTCAATGGAGAGTTATCCTTCAAGCCATTGGATCTCACCTGATCTAATTCTTGATTCCTCAAAGGACTATTCACAAGTACATGAAACTGCAGCTCAATA CCTTCCACAGTACGAGTATCCAATCTCCATGAATACTTGGCAGCCAGACAGACATAGAGAATTCTCGCCAGGTTCATCATACTCGAATTTCACAGGAGAA ATTGAACCTCCTGATGATCTCAGTCACATTGGCTTCATGTCACCTTACTCAGGACATGGAAACTACTTGGGTTTTGGTGGAAATGATGACATGCACTATC AAGGATTTGAGCCCAGGAACCAAGCTCCAATCTGCAAGCAAGCAAGTGGAGATGGTAGTTTGGGGGAATATGGCGGTCTTTGGTCGCAAGAAGACAATAT GGTGATTGTGATCTAG
AA sequence Show only first row Show all	>Potri.001G144400.5 pacid=42788193 polypeptide=Potri.001G144400.5.p locus=Potri.001G144400 ID=Potri.001G144400.5.v4.1 annot-version=v4.1 MGGASLPPGFRFHPTDEELVGYYLQRKAQGLEIELEVIPVIDLYKFDPWELPEKSFLPKRDMEWFFFCPRDRKYPNGSRTNRATKSGYWKATGKDRKVVC KSAVTGYRKTLVFYRGRAPLGDRTDWVMHEYRLCDDISQGSPNLKGAFALCHVVKKNEQGLKISDSQGEPKAKQVGSSSSNVDFTSAVISNEPSNISFDM SSQASYLYNNESRYSSPITSPYQVAPMSDFEPAASMESYPSSHWISPDLILDSSKDYSQVHETAAQYLPQYEYPISMNTWQPDRHREFSPGSSYSNFTGE IEPPDDLSHIGFMSPYSGHGNYLGFGGNDDMHYQGFEPRNQAPICKQASGDGSLGEYGGLWSQEDNMVIVI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.001G144400 [exp]	0	1
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187300 [exp]	25.92	0.4879
					Potri.005G006200 [exp]	34.95	0.4567
AT4G01895			systemic acquired resistance (...		Potri.002G190800 [exp]	45.35	0.4724
					Potri.005G006000 [exp]	70.58	0.4268
AT4G26490			Late embryogenesis abundant (L...		Potri.001G468400 [exp]	116.03	0.3868

Compare expression of checked genes

Potri.001G144400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.