Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NAP6.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32500 535 / 0 ABCI7, ATNAP6 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) AT4G04770 83 / 1e-16 ABCI8, ATNAP1, LAF6, ATABC1 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) AT5G44316 61 / 8e-10 ABCI9 ATP-binding cassette I9, Stabilizer of iron transporter SufD superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089700 [exp] 786 / 0 AT1G32500 544 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Potri.004G016900 [exp] 81 / 5e-16 AT4G04770 924 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017374 [exp] 579 / 0 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10010168 [exp] 577 / 0 AT1G32500 550 / 0.0 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1) Lus10034750 [exp] 78 / 5e-15 AT4G04770 907 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10025788 [exp] 74 / 7e-14 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10035874 [exp] 74 / 7e-14 AT4G04770 914 / 0.0 LONG AFTER FR, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1, ATP-binding cassette I8, ATP binding cassette protein 1 (.1) Lus10009638 [exp] 66 / 2e-13 AT1G32500 54 / 3e-10 ATP-binding cassette I7, non-intrinsic ABC protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01458 [poplar] [flax] SUFBD SUF system FeS cluster assembly, SufBD
Representative CDS sequence Show only first row Show all	>Potri.001G144500.1 pacid=42790753 polypeptide=Potri.001G144500.1.p locus=Potri.001G144500 ID=Potri.001G144500.1.v4.1 annot-version=v4.1 ATGCCTGCTTTAGCAATCACTCCCCAAATTCGCACGCCCATTACTATAAAACCCAAAATCAAGCACAAACAAAAACAGAAACCCAAGAGTTTCTCACTTT CCACAACCCCAATAACACAAGCCAGTTTCTCTGACCCTTTTGTTCTTCAATTAGCTGAGACTCTTGAAGACTCCCTCTCTCCTTCTGTCTCTCTTCAAAG ACTCAGAGATTCCTCCTCTGAGTCTCTCCTCTCTACTTCTTGGCCTTCTCGTAAAGATGAGCCCTTTAGGTTCACTGATACTTCATTTATTAGGCTTTCA CAAATCGTTCCAATCACTAAACCACCACAATTAGATTACTTACCGAGCATTAATGAGGATACCCTTTTGCCTAGTATTGTTATTGCTGATGGGTTTGTGT TAAATTCTATGTCAAAGTTGTCAACTTTGCCTGATGGGGTTTATGTAGGTAGTTTGTTGAGTGATTCTAGTGATAGAATTGCCGAAAGGGTATTGGAGTT TGTAGGTGATTTTGAATGGGGTGATCTGTTTTGGTCCATTAATGGATTAGGAGCTCACGATATGACAGTGGTTTATGTTCCTGCTGGGGTTAAAGTGGAG AATCCCATCCATTTTAAGTATGTTTCAGTCGAGGGAGGAGAGAAGGGGTCTAAAAAGCTACCGGTTTCAAATCCGAGAGTTTTTGTGGTAGTGGAGGAGG GTGGAGAGGTTGGGATAATTGAGGAGTTTGTGAGTAAAGAAGGGAATGATGATAGGTATTATTGGGCGAATCCTGTTTTAGAAGTGGTGATCGGGAAAGG AGCAAAGGTTAGGCATTCTTATGTGCAGAGCCAGTCCTTGAATTCTGCTCATATCAAGTGGACTGCTGTCCGACAGGAAGCAGCTAGTACCTATGAGCTT GTAGAGGTAAGCACCGGGGGGAAATTGAGTAGGCACAATCTCCATGTTCAACAATTGGGTCCAGATACAGCTACAGAGTTATCGACCTTCCACTTGTCTG TTGGTGATCAAACACAAGATTTGCATAGCAGGCTAATTTTGGACCATCCAAGAGGTCGTTCTCAGCAACTTCACAAGTGTATTGTTGCTCATTCACAAGG ACAAGCTGTCTTTGACGGGAATGTAAAGGTCAACAGATATGCACAGCAGACAGATGCAGGACAATTAACAAGGAGCCTCCTCCTTGAACCACGTGCAACT GTGAATGTCAAACCCAATCTCCAAATTATTGCAGATGATGTCAAGTGCTCCCATGGAGCTGCAATCAGCGATCTGGAAGAAACCCAACTATTCTACTTTC AGGCACGCGGCATTGACTTAGAGACAGCTCGAAAGGCTCTTGTATTTTCTTTTGGAGCTGAGGTAATTGAGAGGTTGCCTAATTCTTTTATGCAGAAGCA AGTCGAGAGTCATGTCAAAGGATTACTGAGTTCCACTTTCAAGGGATCTTCACATTAA
AA sequence Show only first row Show all	>Potri.001G144500.1 pacid=42790753 polypeptide=Potri.001G144500.1.p locus=Potri.001G144500 ID=Potri.001G144500.1.v4.1 annot-version=v4.1 MPALAITPQIRTPITIKPKIKHKQKQKPKSFSLSTTPITQASFSDPFVLQLAETLEDSLSPSVSLQRLRDSSSESLLSTSWPSRKDEPFRFTDTSFIRLS QIVPITKPPQLDYLPSINEDTLLPSIVIADGFVLNSMSKLSTLPDGVYVGSLLSDSSDRIAERVLEFVGDFEWGDLFWSINGLGAHDMTVVYVPAGVKVE NPIHFKYVSVEGGEKGSKKLPVSNPRVFVVVEEGGEVGIIEEFVSKEGNDDRYYWANPVLEVVIGKGAKVRHSYVQSQSLNSAHIKWTAVRQEAASTYEL VEVSTGGKLSRHNLHVQQLGPDTATELSTFHLSVGDQTQDLHSRLILDHPRGRSQQLHKCIVAHSQGQAVFDGNVKVNRYAQQTDAGQLTRSLLLEPRAT VNVKPNLQIIADDVKCSHGAAISDLEETQLFYFQARGIDLETARKALVFSFGAEVIERLPNSFMQKQVESHVKGLLSSTFKGSSH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Potri.001G144500 [exp]	0	1	NAP6.2
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	4.47	0.9694
AT5G25752		ATRBL11	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.018G037300 [exp]	4.47	0.9676
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.003G103300 [exp]	4.58	0.9662
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Potri.014G160600 [exp]	6.32	0.9707
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	8.24	0.9611
AT2G38660			Amino acid dehydrogenase famil...		Potri.006G114100 [exp]	8.30	0.9487
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.008G012500 [exp]	9.79	0.9653	NAP7.2
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Potri.014G191200 [exp]	11.00	0.9648
AT4G24770		CP31, ATRBP33, ...	ARABIDOPSIS THALIANA RNA BINDI...		Potri.012G090200 [exp]	12.48	0.9690
AT3G10970			Haloacid dehalogenase-like hyd...		Potri.019G049000 [exp]	12.64	0.9534

Compare expression of checked genes

Potri.001G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.