Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35350 768 / 0 PLL1 poltergeist like 1 (.1) AT2G46920 517 / 6e-172 POL poltergeist, Protein phosphatase 2C family protein (.1.2) AT5G02400 357 / 9e-113 PLL2 pol-like 2 (.1) AT1G07630 353 / 3e-111 PLL5 pol-like 5 (.1) AT2G28890 345 / 2e-108 PLL4 poltergeist like 4 (.1) AT3G09400 340 / 2e-106 PLL3 pol-like 3 (.1.2) AT3G16560 218 / 1e-62 Protein phosphatase 2C family protein (.1) AT3G55050 141 / 3e-36 Protein phosphatase 2C family protein (.1.2) AT5G66080 141 / 3e-36 Protein phosphatase 2C family protein (.1) AT3G51370 137 / 7e-36 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089500 [exp] 1330 / 0 AT2G35350 764 / 0.0 poltergeist like 1 (.1) Potri.002G185000 [exp] 516 / 6e-171 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.009G030600 [exp] 365 / 4e-115 AT1G07630 884 / 0.0 pol-like 5 (.1) Potri.014G110500 [exp] 370 / 5e-115 AT2G46920 1092 / 0.0 poltergeist, Protein phosphatase 2C family protein (.1.2) Potri.001G239300 [exp] 363 / 3e-114 AT2G28890 862 / 0.0 poltergeist like 4 (.1) Potri.006G085000 [exp] 347 / 1e-108 AT1G07630 661 / 0.0 pol-like 5 (.1) Potri.003G159600 [exp] 211 / 1e-59 AT3G16560 476 / 7e-165 Protein phosphatase 2C family protein (.1) Potri.010G024800 [exp] 207 / 2e-58 AT3G16560 502 / 5e-175 Protein phosphatase 2C family protein (.1) Potri.008G207700 [exp] 206 / 7e-58 AT3G16560 530 / 0.0 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004554 [exp] 959 / 0 AT2G35350 512 / 3e-170 poltergeist like 1 (.1) Lus10000896 [exp] 860 / 0 AT2G35350 516 / 3e-173 poltergeist like 1 (.1) Lus10025348 [exp] 351 / 4e-111 AT1G07630 682 / 0.0 pol-like 5 (.1) Lus10024397 [exp] 350 / 2e-110 AT1G07630 674 / 0.0 pol-like 5 (.1) Lus10016555 [exp] 352 / 8e-110 AT1G07630 868 / 0.0 pol-like 5 (.1) Lus10040823 [exp] 350 / 4e-109 AT1G07630 869 / 0.0 pol-like 5 (.1) Lus10004793 [exp] 225 / 6e-65 AT3G16560 613 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008378 [exp] 221 / 2e-63 AT3G16560 615 / 0.0 Protein phosphatase 2C family protein (.1) Lus10015047 [exp] 149 / 3e-39 AT3G55050 476 / 7e-169 Protein phosphatase 2C family protein (.1.2) Lus10019893 [exp] 147 / 2e-38 AT3G12620 470 / 2e-166 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.001G144700.1 pacid=42790752 polypeptide=Potri.001G144700.1.p locus=Potri.001G144700 ID=Potri.001G144700.1.v4.1 annot-version=v4.1 ATGGGAAGTGGACTCTCCACAATCTTCCCTTGCTTCAAACCGCCAAACAACAATCAACAGGACTTGATTTTCACTGCTTCTGAGCCGTTAGATGAAACCC TAGGTCACTCCTTCTGTTACGTCCGATCTTCCAACCGTTTTCTCTCCCCTACTCCCTCCGATCGCTTTCTCTCTCCTTCTCACTCTCTCCGTTTCTCCCC GACCCGGCCGGTACCCGAAACCGGTTTCAAGTCCATTTCCGGCGCTTCTGTTTCTGCCAATACTTCCACTCCTAGAACTGTCCTCCAACTTGACAATATC TACGACGATGCCGCTGATGTTATTAACTCTTCTAATAATAGTGGCGGTTTTGTTACTTCTTCTAGTGGAGGTGTAAGGGTTAATAACACTGGCAGTATTG TGAATAATGTGACTGGTTTTGAGAGCACGGCGTCGTTTAGTGCGTTGCCGTTACAGCCAGTGCCACGTGGAGGGGAGGGTTTTTTTATGTCGGGTCCGAT CGAGAGAGGCGCCCTGTCCGGTCCGCTTGACCCGAATACTGCTGGAGCAACCGATGGGAGTGGCGGGCGGGTGCATTTTTCTGCTCCACTTGGTGGCATT TATGCAAAAAACAAAAAGAGGAGGGGGAAGGGTATTTCGAGGATTAAAAAGGCGATTTATCGGAATATATCTGAGAAGAATCGGCCGTGGGTTGTTCCGG TGTTGAATTTTGTGAACCGGAGGGAAAACTCGGGGATTGAAGAGGAGAGGGAGGGGAGAGAAGAAGGTGACAGTGTGCAGTGGGCATTAGGGAAGGCAGG AGAGGATAGGGTGCATGTGGTTGTATCCGAGGAACACGGGTGGTTGTTTGTTGGGGTTTATGATGGGTTTAATGGACCTGATGCGCCGGAATTCTTGATG GGGAATCTTTATAGAGCTGTTTTTAATGAACTTCAAGGTTTGTTTTGGGAGGTTGCTGGAGAGGAGCCTCAAGAGACTATTCACGCTGAGGGAATTGAAA GTAAAACTGACCCATTAATGGAAAAGAGTGGTGCAAGTGACGTGAAGGGTTCAATTGTGATAAGTGAATGCAATTTGGTGTCAAAAACAGATCCTTTAGA GGAAGTTTGTGTTAAAAAGGATGGCGATGGTTTAATTTGTGGAATGGCATCTAATGTGGTCAATCAGGATAGAGTGAAGAGGGTTACGTTTCAACCAGAG GAGACGGAGGGGACAGCCAGTACCCGGAGTAGGAGGTTATGGGAGTTTCTAGCGGAGGATGATATTGAAGATGGGCTTGATCTTTCGGGGTCAGATAGGT TTGCTTTTTCTGTAGATGATGCAATTAGTGTTGGTAATGCCGGGTCACCTGTTAGCAGAAGGTGGTTATTGTTGTCAAAATTGAAACAAGGGTTGTCGAA ACATAAGGAGAGGAAGTTGTTTCCATGGAAATTTGGATTGGAGGGGAAGGGGAAGGTGGAGGTGGAGGTGGAGGTGGAGAGTAGTAAAGTAGAGGAAAGG GTTTTGAAGAGGAAGTGGAAGGCAGGACCGGTTGACCATGAGCTGGTTTTGGGGGCATTGTCGAGGGCATTAGAAGCGACTGAATTAGCGTACTTGGATA TGACAGATAAGGTGTTGGATACCAATCCAGAGTTGGCATTGATGGGTTCATGTTTGTTGGCTGTGTTGATGAGGGATGAAGATGTGTATGTGATGAATGT GGGTGATAGCAGGGCAATTGTTGCACAGTATGAGCCACAAGAAGTTGGTTCCAGTGTGAATGAAAATGAACTAAGCACAGAGGCAATAGTTGAAACGAGA TTGACTGCATTGCAGCTATCTACTGATCACAGCACAAACATTGAAGAAGAAGTCATTAGAATCAAGAACGAGCACCCAGACGATAACCAGTGCATTGTGA ATGACAGGGTGAAAGGTCGTCTGATGGTTACCAGAGCGTTTGGGGCAGGATTTCTGAAAAGGCCCAAGTTGAATGATGCCTTGCTGGAAATGTTCCGAAA TGAGTATATCGGTACTGCACCGTATATATCCTGTTCACCTTCTCTTCGTCACCATCAACTGTGTCCAAGAGATCAATTTTTAGTTCTCTCATCTGATGGA TTATATCAGTATCTGACCAATCAGGAAGTGGTTTCTCATATTGAGAGTTTCATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACCTGATAGAGGAGC TTCTTTTTCGTGCAGCAAGGAAAGCTGGGATGGATTTCCATGAATTACTGGACATCCCACAAGGAGATCGCAGAAAGTACCATGATGATGTTACTGTTAT GGTGATATCGCTTGAAGGAAGAATCTGGAAATCATCAGGAAAGTACCTTTAA
AA sequence Show only first row Show all	>Potri.001G144700.1 pacid=42790752 polypeptide=Potri.001G144700.1.p locus=Potri.001G144700 ID=Potri.001G144700.1.v4.1 annot-version=v4.1 MGSGLSTIFPCFKPPNNNQQDLIFTASEPLDETLGHSFCYVRSSNRFLSPTPSDRFLSPSHSLRFSPTRPVPETGFKSISGASVSANTSTPRTVLQLDNI YDDAADVINSSNNSGGFVTSSSGGVRVNNTGSIVNNVTGFESTASFSALPLQPVPRGGEGFFMSGPIERGALSGPLDPNTAGATDGSGGRVHFSAPLGGI YAKNKKRRGKGISRIKKAIYRNISEKNRPWVVPVLNFVNRRENSGIEEEREGREEGDSVQWALGKAGEDRVHVVVSEEHGWLFVGVYDGFNGPDAPEFLM GNLYRAVFNELQGLFWEVAGEEPQETIHAEGIESKTDPLMEKSGASDVKGSIVISECNLVSKTDPLEEVCVKKDGDGLICGMASNVVNQDRVKRVTFQPE ETEGTASTRSRRLWEFLAEDDIEDGLDLSGSDRFAFSVDDAISVGNAGSPVSRRWLLLSKLKQGLSKHKERKLFPWKFGLEGKGKVEVEVEVESSKVEER VLKRKWKAGPVDHELVLGALSRALEATELAYLDMTDKVLDTNPELALMGSCLLAVLMRDEDVYVMNVGDSRAIVAQYEPQEVGSSVNENELSTEAIVETR LTALQLSTDHSTNIEEEVIRIKNEHPDDNQCIVNDRVKGRLMVTRAFGAGFLKRPKLNDALLEMFRNEYIGTAPYISCSPSLRHHQLCPRDQFLVLSSDG LYQYLTNQEVVSHIESFMEKFPDGDPAQHLIEELLFRAARKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35350		PLL1	poltergeist like 1 (.1)		Potri.001G144700 [exp]	0	1
AT4G27190			NB-ARC domain-containing disea...		Potri.001G432680 [exp]	5.09	0.7497
AT4G27250			NAD(P)-binding Rossmann-fold s...		Potri.001G415500 [exp]	10.09	0.6634
AT4G27220			NB-ARC domain-containing disea...		Potri.001G425500 [exp]	10.58	0.7343
AT1G80870			Protein kinase superfamily pro...		Potri.001G043700 [exp]	10.77	0.7049
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.012G139600 [exp]	11.22	0.6624
AT1G16390		3-Oct, ATOCT3	organic cation/carnitine trans...		Potri.016G039000 [exp]	14.66	0.7028
AT2G25430			epsin N-terminal homology (ENT...		Potri.006G255000 [exp]	21.21	0.6494
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	21.44	0.6724
AT3G13600			calmodulin-binding family prot...		Potri.001G005600 [exp]	23.21	0.6170
AT3G14470			NB-ARC domain-containing disea...		Potri.004G169800 [exp]	25.37	0.6790

Compare expression of checked genes

Potri.001G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.