Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	gdcH4,GDCH.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32470 254 / 4e-88 Single hybrid motif superfamily protein (.1) AT2G35370 250 / 2e-86 GDCH glycine decarboxylase complex H (.1) AT2G35120 198 / 5e-66 Single hybrid motif superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G089300 [exp] 307 / 5e-109 AT1G32470 260 / 3e-90 Single hybrid motif superfamily protein (.1) Potri.015G122500 [exp] 191 / 4e-63 AT2G35120 224 / 2e-76 Single hybrid motif superfamily protein (.1) Potri.012G123700 [exp] 188 / 6e-62 AT2G35120 217 / 2e-73 Single hybrid motif superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030979 [exp] 251 / 8e-87 AT1G32470 254 / 4e-88 Single hybrid motif superfamily protein (.1) Lus10035374 [exp] 248 / 3e-85 AT1G32470 254 / 6e-88 Single hybrid motif superfamily protein (.1) Lus10018319 [exp] 186 / 7e-61 AT2G35120 244 / 2e-84 Single hybrid motif superfamily protein (.1) Lus10017133 [exp] 114 / 3e-33 AT2G35120 162 / 1e-52 Single hybrid motif superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [poplar] [flax] Hybrid PF01597 [poplar] [flax] GCV_H Glycine cleavage H-protein
Representative CDS sequence Show only first row Show all	>Potri.001G144800.1 pacid=42792234 polypeptide=Potri.001G144800.1.p locus=Potri.001G144800 ID=Potri.001G144800.1.v4.1 annot-version=v4.1 ATGGCACTGAGGTTGTGGGCTTCTTCTACAGCCAATGCACTGAGAATCTCAGTCGCCTCCACAGCTCACGTCTCTCCTTCATACTCCCTCTCAAGATGCT TCTCCACTGTACTAGATGGGTTGAAGTATGCAACTTCACATGAATGGGTGAAGCATGAAGGCTCGCTGGCTACTATTGGCATTACCGATCATGCTCAGGA CCATTTGGGTGAAGTAGTGTTCGTGGACCTGCCAGAGCCGGATGGTTCTGTCAGCCAAGGGAAGAGCTTTGGAGCAGTGGAAAGTGTGAAGGCAACTAGT GATATCAATTCTCCGATCTCCGGTGAGATTGTTGAGGTTAATACACAGCTTAGTGAGACTCCTGGACTGATAAATAAAAGTCCATATGAAGAGGGATGGA TGATCAAGGTGAAGCCAAGCAACCCATCAGAACTAGAATCCTTACTGGGTGCAAAGGAATACACCAAACTCTGCGAGGAAGAAGATCATTAG
AA sequence Show only first row Show all	>Potri.001G144800.1 pacid=42792234 polypeptide=Potri.001G144800.1.p locus=Potri.001G144800 ID=Potri.001G144800.1.v4.1 annot-version=v4.1 MALRLWASSTANALRISVASTAHVSPSYSLSRCFSTVLDGLKYATSHEWVKHEGSLATIGITDHAQDHLGEVVFVDLPEPDGSVSQGKSFGAVESVKATS DINSPISGEIVEVNTQLSETPGLINKSPYEEGWMIKVKPSNPSELESLLGAKEYTKLCEEEDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32470			Single hybrid motif superfamil...		Potri.001G144800 [exp]	0	1	gdcH4,GDCH.2
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Potri.002G253800 [exp]	2.44	0.9822	PSAE1.1
AT4G01150			unknown protein		Potri.014G093900 [exp]	3.16	0.9803	CAM2.1
AT4G26530			Aldolase superfamily protein (...		Potri.001G468100 [exp]	3.46	0.9731	Pt-FBA.2
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.014G175600 [exp]	6.24	0.9797	PSAL.2
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Potri.006G139600 [exp]	6.92	0.9792	Lhca6,Pt-LHCA2*1.1
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Potri.011G003800 [exp]	7.07	0.9788
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Potri.005G161900 [exp]	7.74	0.9697
					Potri.004G068600 [exp]	7.93	0.9743
AT1G55670		PSAG	photosystem I subunit G (.1)		Potri.001G471900 [exp]	10.19	0.9741	Pt-PSAG.1
AT5G40950		RPL27	ribosomal protein large subuni...		Potri.001G329500 [exp]	10.67	0.9762	Pt-RPL27.5

Compare expression of checked genes

Potri.001G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.