Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 947 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 763 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 630 / 0 Major facilitator superfamily protein (.1) AT3G54140 488 / 6e-167 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G62200 457 / 5e-155 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02040 455 / 4e-154 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT5G01180 443 / 2e-149 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 401 / 1e-133 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 372 / 1e-121 Major facilitator superfamily protein (.1) AT3G54450 349 / 3e-113 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088800 [exp] 1104 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 875 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 669 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 666 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 496 / 5e-170 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.001G248600 [exp] 473 / 3e-161 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 470 / 5e-160 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 468 / 3e-159 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 466 / 1e-158 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030945 [exp] 927 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10040102 [exp] 926 / 0 AT1G32450 910 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 905 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 891 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10013736 [exp] 626 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 624 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030287 [exp] 522 / 7e-180 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 489 / 4e-167 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 485 / 6e-166 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 479 / 3e-163 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF00854 [poplar] [flax] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Potri.001G145200.1 pacid=42789006 polypeptide=Potri.001G145200.1.p locus=Potri.001G145200 ID=Potri.001G145200.1.v4.1 annot-version=v4.1 ATGGCTTGTTTGGAGGTTTGTAAGGAGGGTAAGTTCAAAGAGGGACGAGAAGAATGCACTTTTGATGGAACAGTTGATTGGCATGGTCGTCCTGCTATCA AAGACAAATCTGGGCAATGGGTTGCTGGAATTATTATACTTTTGAACCAAGGTCTAGCAACACTTGCATTCTTTGGTGTTGGTGTGAACTTAGTTCTGTT CCTGACAAGGGTTTTGCAACAAAGCAATGCCGATGCTGCTAATAACGTTAGCAAATGGACCGGGACCGTCTACATCTTCTCTCTTGTTGGTGCTTTCCTC AGCGATTCCTACTGGGGAAGATACAAAACCTGTGCAATTTTTCAGGTCATCTTTGTCATAGGCCTAGTAATCCTATCACTCTCGTCATACCTTTTCTTAA TCAGACCAAAAGGATGTGGGAATGAGCTGACTCCATGTGGATCCCATTCAAGCATGGAAGTTTCATTGTTTTACCTCTCCATTTACCTCGTTGCTCTAGG AAATGGAGGGTATCAACCTAACATTGCTACATTTGGGGCTGATCAGTTTGATGAAGAGGACCCCAGGGAAGGACATTCCAAGGTTGCATTTTTTAGCTAC TTCTACCTGGCCTTGAACCTCGGTTCCCTCTTTTCCAACACAATATTGGGGTATTTTGAGGATGAAGGGGTGTGGGCACTAGGATTCTGGGCGTCTGCAG GTTCTGCCTTTGCAGCATTGGTCTTGTTTCTAGGAGGAACATCTAGATACCGGCACTTCAAACCAAGTGGTAACCCTCTCTCCAGGTTCTGCCAAGTCAT CATCGCTGCAATGAAGAAATGGAAGCTCGAGATGCCACGAGATGGAGAGGAGGAGCTGTATAATGTCCATGCAAAAGATTGCTCGATGAATGGCAACAGA AAGATTCTCCACACTGATGGATTCAAGTTCTTGGATAGAGCAGCTTTCATCTCTTCAAGAGATATTGATGATCAAAAGCGGGGCTGTCGCAACCCATGGC GTCTGTGCCCAATTACACAAGTAGAAGAAGTTAAATGCATACTGAGACTACTCCCAATTTGGCTCTGCACCATAATCTATTCAGTGGTTTTCACACAGAT GGCCTCTCTGTTTGTTGAGCAGGGTGCTGCAATGAAAACTACAGTATCAAACTTCAAAATCCCTCCTGCCAGCATGTCTAGCTTCGATATTCTAAGTGTT GCGTTTTTCATTTTCCTATATCGGCGAGTTCTTGATCCACTTGTAAGCAGAGTTAAAAAGACGGGTTCAAAAGGACTAACTGAACTTCAAAGAATGGGTG TTGGCCTTGTGATAGCAATAGTGGCAATGATTTCGGCTGGGCTTGTGGAGTGTTATAGACTCAGGTATGCAAGAAAAGACTGCACACACTGTGAAGGCTC AAGCTCTATGAGCATCTTCTGGCAAGTTCCTCAGTATGCACTTATTGGAGCTTCTGAAGTTTTCATGTATGTTGGTCAACTGGAGTTCTTTAATGCACAA ACTCCTGATGGATTAAAGAGCTTCGGAAGTGCACTTTGTATGACATCTATCTCGCTAGGGAATTACGTGAGTAGCTTGCTTGTGACTATGGTTATGAAGA TCTCGACTGAGGATCACATGCCCGGATGGATCCCCGGAAATCTGAACAAAGGTCACCTGGATAGGTTTTACTTCCTCTTAGCAACCTTGACAACTATAGA CCTAGTTGTGTATATAGCATGTGCTAGGTGGTACAAGTCTATCCAACTGGAAGGAAAATGCGAGCTGAATGATCAGGAAGAGAACTTCAGAGTCTGA
AA sequence Show only first row Show all	>Potri.001G145200.1 pacid=42789006 polypeptide=Potri.001G145200.1.p locus=Potri.001G145200 ID=Potri.001G145200.1.v4.1 annot-version=v4.1 MACLEVCKEGKFKEGREECTFDGTVDWHGRPAIKDKSGQWVAGIIILLNQGLATLAFFGVGVNLVLFLTRVLQQSNADAANNVSKWTGTVYIFSLVGAFL SDSYWGRYKTCAIFQVIFVIGLVILSLSSYLFLIRPKGCGNELTPCGSHSSMEVSLFYLSIYLVALGNGGYQPNIATFGADQFDEEDPREGHSKVAFFSY FYLALNLGSLFSNTILGYFEDEGVWALGFWASAGSAFAALVLFLGGTSRYRHFKPSGNPLSRFCQVIIAAMKKWKLEMPRDGEEELYNVHAKDCSMNGNR KILHTDGFKFLDRAAFISSRDIDDQKRGCRNPWRLCPITQVEEVKCILRLLPIWLCTIIYSVVFTQMASLFVEQGAAMKTTVSNFKIPPASMSSFDILSV AFFIFLYRRVLDPLVSRVKKTGSKGLTELQRMGVGLVIAIVAMISAGLVECYRLRYARKDCTHCEGSSSMSIFWQVPQYALIGASEVFMYVGQLEFFNAQ TPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDHMPGWIPGNLNKGHLDRFYFLLATLTTIDLVVYIACARWYKSIQLEGKCELNDQEENFRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Potri.001G145200 [exp]	0	1
AT3G10985		WI12, ATWI-12, ...	ARABIDOPSIS THALIANA WOUND-IND...		Potri.019G125900 [exp]	2.00	0.9636
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006900 [exp]	18.76	0.9403	Pt-ZIP4.1
AT3G05640			Protein phosphatase 2C family ...		Potri.010G006200 [exp]	19.23	0.9441
AT3G02645			Plant protein of unknown funct...		Potri.003G024100 [exp]	20.09	0.8806
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071700 [exp]	22.04	0.9419	PtrPht1-2,PT2.9
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G272500 [exp]	23.21	0.9433
AT4G00910			Aluminium activated malate tra...		Potri.003G145000 [exp]	24.33	0.9367
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.002G209602 [exp]	24.97	0.9423
AT3G01190			Peroxidase superfamily protein...		Potri.019G063201 [exp]	27.92	0.9406
AT1G05300		ZIP5	zinc transporter 5 precursor (...		Potri.006G006800 [exp]	28.00	0.9296	Pt-ZIP4.4

Compare expression of checked genes

Potri.001G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.