Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32440 847 / 0 PKP3 plastidial pyruvate kinase 3 (.1) AT5G52920 776 / 0 PKP-BETA1, PKP2, PKP1 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) AT3G22960 379 / 7e-125 PKP-ALPHA, PKP1 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) AT5G63680 283 / 1e-88 Pyruvate kinase family protein (.1) AT5G08570 278 / 7e-87 Pyruvate kinase family protein (.1) AT5G56350 272 / 8e-85 Pyruvate kinase family protein (.1) AT3G25960 270 / 1e-83 Pyruvate kinase family protein (.1) AT3G55650 268 / 9e-83 Pyruvate kinase family protein (.1) AT4G26390 266 / 3e-82 Pyruvate kinase family protein (.1) AT3G04050 264 / 2e-81 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088700 [exp] 1061 / 0 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1) Potri.012G034000 [exp] 794 / 0 AT5G52920 970 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Potri.010G080700 [exp] 378 / 2e-124 AT3G22960 930 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.008G159700 [exp] 376 / 9e-124 AT3G22960 945 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.009G084700 [exp] 326 / 2e-104 AT3G22960 620 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.001G289300 [exp] 325 / 3e-104 AT3G22960 623 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 278 / 1e-86 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 276 / 5e-86 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.010G254900 [exp] 270 / 7e-84 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011057 [exp] 894 / 0 AT1G32440 827 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10000672 [exp] 890 / 0 AT1G32440 830 / 0.0 plastidial pyruvate kinase 3 (.1) Lus10039316 [exp] 738 / 0 AT5G52920 902 / 0.0 PLASTIDIAL PYRUVATE KINASE 2, PLASTIDIAL PYRUVATE KINASE 1, plastidic pyruvate kinase beta subunit 1 (.1) Lus10039396 [exp] 379 / 4e-125 AT3G22960 934 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10006633 [exp] 374 / 4e-123 AT3G22960 920 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10012446 [exp] 324 / 1e-103 AT3G22960 616 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10033756 [exp] 308 / 3e-97 AT3G22960 599 / 0.0 PLASTIDIAL PYRUVATE KINASE 1, Pyruvate kinase family protein (.1) Lus10017364 [exp] 280 / 1e-87 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10041003 [exp] 275 / 1e-85 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 274 / 3e-85 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00224 [poplar] [flax] PK Pyruvate kinase, barrel domain CL0151 [poplar] [flax] PF02887 [poplar] [flax] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.001G145300.1 pacid=42787647 polypeptide=Potri.001G145300.1.p locus=Potri.001G145300 ID=Potri.001G145300.1.v4.1 annot-version=v4.1 ATGGCGACGATTAACAATATGTCGACCATAATGTGTAGGGATCATCGGATTTTGTCTTCGTCGAGTAAATTGAGTGATGTGTTTATGTTGGAATCAAGGC TTAGAAAGAGATGCTTCTTTCAAAATCCCAACTTTACAGTTAGATCCATGAAAGTCAGGGAGCAGAACCAGACGGCAAACCTGGTCTCTTCTAATGGTCC TTTAACTGCCTCTGACAAGGTGAACTCTCCTTTAGAGCTTCTGACCAACAACCAAACTTTGGTGAAGGAAAAGACAGATCCAATCTCTCGAAGGAAAACA AAAATAGTTTGTACAATTGGTCCTTCCACAAGCTCACGTGAAATGATATGGAAACTGGCTGAAGCTGGAATGAACGTGGCCCGCTTAAATATGTCGCATG GAGACCACGCTTCCCACAAGATAACTATTGATCTTGTTAAAGAGTATAATGCACAATCTGATGACAACGTCATTGCCATAATGCTAGACACCAAGGGTCC TGAGGTTAGAAGTGGAGATGTGCCTCAACCAATTATTCTTGAGGAGGGAAGAGAATTTAATTTCACCATCAAAAGAGGAGTCAGCTCTGAAGACACTGTT AGTGTAAACTACGATGACTTCATAAATGATGTGGAGGTTGGGGACATGATACTGGTGGATGGTGGAATGATGTCATTGGCTGTGAAATCAAAGACAAATG ATCTAGTTAAGTGTGTGGTAGTTGATGGTGGAGAACTAAAATCAAGGCGCCATTTAAACGTGCGTGGAAAAAGTGCAACTCTGCCTTCAATTACAGACAA AGACTGGGAAGATATCAAATTTGGGGTGGATAACCAAGTTGATTTTTATGCTGTCTCCTTCGTGAAGGATGCGGAAGTGGTTCATGAGCTAAAAGATTAT CTCAAAAGCTGCAATGCTGACATTCATGTGATTGTAAAAATTGAAAGTGCTGACTCCATACCAAATCTTCATTCAATAATTTCCGCATCTGACGGGGCAA TGGTTGCTCGTGGAGACCTTGGTGCTGAACTTCCAATAGAGGAAGTCCCTTTATTGCAGGAAGACATCATTAGAAGGTGCCACAGTATGCAGAAACCAGT TATTGTAGCGACAAACATGCTGGAAAGCATGATTGATCATCCTACACCAACAAGGGCTGAGGTTTCAGATATAGCAATTGCAGTACGTGAAGGTGCTGAT GCAGTCATGCTTTCAGGGGAAACTGCCCATGGAAAGTATCCTCTTAAAGCTGTTAAAGTCATGCACACAGTGGCATTGAGAACAGAATCAAGTCTGCCAG TAAACACAACAGCACCTACCCACAACGTCTATCAGAGCCATATGGGTGAAATGTTTGCTTTCCATGCCACAATTATGGCTAACACTCTCAATACACCCAT CATCGTCTTCACAAGAACAGGATCCATGGCTATACATTTAAGTCATTTTCGGCCTTCCTCAACAATATTTGCCTTCACAAATGAAGAAAGGATAAAGCAG AGGCTGGTACTTTATCAGGGTGTCAAGCCAATATATATGCAGTTTTCAGACGACGCAGAGGAGACCTTCTCTCGAGCACTCAAGCTACTATTGAATAAAG GTCAATTGATGGAAGGGCAGCACGTTACCCTTGTCCAAAGTGGAGCACAACCTATCTGGCGTCGAAAATCTACTCATCACATACAAGTTTGCAAGGTCCA GTCCTAA
AA sequence Show only first row Show all	>Potri.001G145300.1 pacid=42787647 polypeptide=Potri.001G145300.1.p locus=Potri.001G145300 ID=Potri.001G145300.1.v4.1 annot-version=v4.1 MATINNMSTIMCRDHRILSSSSKLSDVFMLESRLRKRCFFQNPNFTVRSMKVREQNQTANLVSSNGPLTASDKVNSPLELLTNNQTLVKEKTDPISRRKT KIVCTIGPSTSSREMIWKLAEAGMNVARLNMSHGDHASHKITIDLVKEYNAQSDDNVIAIMLDTKGPEVRSGDVPQPIILEEGREFNFTIKRGVSSEDTV SVNYDDFINDVEVGDMILVDGGMMSLAVKSKTNDLVKCVVVDGGELKSRRHLNVRGKSATLPSITDKDWEDIKFGVDNQVDFYAVSFVKDAEVVHELKDY LKSCNADIHVIVKIESADSIPNLHSIISASDGAMVARGDLGAELPIEEVPLLQEDIIRRCHSMQKPVIVATNMLESMIDHPTPTRAEVSDIAIAVREGAD AVMLSGETAHGKYPLKAVKVMHTVALRTESSLPVNTTAPTHNVYQSHMGEMFAFHATIMANTLNTPIIVFTRTGSMAIHLSHFRPSSTIFAFTNEERIKQ RLVLYQGVKPIYMQFSDDAEETFSRALKLLLNKGQLMEGQHVTLVQSGAQPIWRRKSTHHIQVCKVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Potri.001G145300 [exp]	0	1
AT1G09810		ECT11	evolutionarily conserved C-ter...		Potri.003G008400 [exp]	2.44	0.7532
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Potri.015G114600 [exp]	4.69	0.7614
AT3G59940			Galactose oxidase/kelch repeat...		Potri.007G147000 [exp]	9.38	0.7073
AT5G48240			unknown protein		Potri.014G170500 [exp]	24.91	0.7084
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.005G135500 [exp]	35.72	0.6883
AT1G12830			unknown protein		Potri.017G061400 [exp]	58.44	0.6777
AT1G31460			unknown protein		Potri.001G128600 [exp]	64.45	0.6497
AT5G58530			Glutaredoxin family protein (....		Potri.008G072200 [exp]	65.77	0.6352
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G276200 [exp]	113.92	0.6810
AT5G11240			transducin family protein / WD...		Potri.010G005400 [exp]	115.15	0.6660

Compare expression of checked genes

Potri.001G145300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.