Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57990 80 / 3e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G088500 [exp] 524 / 0 AT3G57990 58 / 5e-09 unknown protein Potri.016G046900 [exp] 82 / 3e-17 AT3G57990 345 / 3e-118 unknown protein Potri.006G191800 [exp] 79 / 4e-16 AT3G57990 299 / 1e-99 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021042 [exp] 62 / 2e-10 AT3G57990 341 / 6e-116 unknown protein Lus10004184 [exp] 60 / 1e-09 AT3G57990 329 / 3e-111 unknown protein Lus10016270 [exp] 59 / 2e-09 AT3G57990 300 / 4e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.001G145400.1 pacid=42790073 polypeptide=Potri.001G145400.1.p locus=Potri.001G145400 ID=Potri.001G145400.1.v4.1 annot-version=v4.1 ATGAAGCTTTCCCTCAATCTTCAAGATGAACCCCAAATCCAAAACCTTATCTTGAAAGCCAAACTACCCATTTCAATATTCAATCAACCGTTCACTTCTA TCTTCACCACCACCGCGGCAAACTCCATTTCTGACCTTACTTTTGCTCTCTCTACAAACTTCCCTTCTGGTCCTTCTCTCAAGCTTACCTATACTCCATC CACAACAACAACAACAGCAACAACTGCCGTTTCTCCTCTTTCTCTTTCTCTTAAATCAGGGTTAGGCCTTTGTGGCTCTCCACATAATTCCCCTCTTGTT TTCTCTGCTCACTTTTCTCTCTCTAATTCAAGCCCCTGTGTGATTGTCCCTACTTTCTCTCTTCAATTCAAGCCAAATTTCGGCCATTTCTCTCTCCACA AGAGAACCACACCTCCATCTTCAAACCCTAACTATGATCCTAGTTGTTGGTCCTACACAAATGGGCCCCATTTGGAATCCGGGTCACCTTCAAAATCTCA ACTTGGAGATGGGTTTGCCTCAGATGGGTCATCAGGTTGGCAGGAGTTGAAATTGGAGCCGTGTAATGGTAAAGGGAAAGAGGGGTTTGCAAACCGTAAT TACATTGATGATGTTTATGTTGATAACAATGGAATTGGGTTTTTGCCAGAGAGGCAACCGGTCTGGAAAGATGGAAAGAAAGAAGGGTTTTCTAGTGGAG TTGGTGTAAAGGCAAGAACAGTGTTGCCATTGACTAAAAGGGTGATGATGAATATGAGGTGGGCTGTGAATTTTCCTGGTGAGTTTGGAATAAAAATGCC TTACTTGATAGTGAATAAGATTGGGATTGAGAGGGTTGAGGTGTTAAAGGAAGTGAAGAAAGAAAAAAGCAATGAGAGTAATGTGGGCGATTTAGAGTTG TTGAAAGGAATGTGTTTTTGGATGAGAAGGAATTTGGAGGTGTTAGAGACGGAAAATAGGGAGATGAAGCAATATTTGGAGGACATGAGATTGGGAGTTT CAGCGAGGAATTCGCGCAGGGAGGCTAATGGTCCTGTTAAGAGAGTGGTGCCACGTTCAATTGGTAGTCTTGATGAGTTTGACCAGTGGAAGAGCAAGAA AAATGATGGAGAAGGAAATGGGCAAAGAGAATTGAAGAAGCCTGCAAATAAGGTGACTAACTTGGAAAGTGAGTTACAGAAGGCTATTAAAGCTGCTTCC TCTTAA
AA sequence Show only first row Show all	>Potri.001G145400.1 pacid=42790073 polypeptide=Potri.001G145400.1.p locus=Potri.001G145400 ID=Potri.001G145400.1.v4.1 annot-version=v4.1 MKLSLNLQDEPQIQNLILKAKLPISIFNQPFTSIFTTTAANSISDLTFALSTNFPSGPSLKLTYTPSTTTTTATTAVSPLSLSLKSGLGLCGSPHNSPLV FSAHFSLSNSSPCVIVPTFSLQFKPNFGHFSLHKRTTPPSSNPNYDPSCWSYTNGPHLESGSPSKSQLGDGFASDGSSGWQELKLEPCNGKGKEGFANRN YIDDVYVDNNGIGFLPERQPVWKDGKKEGFSSGVGVKARTVLPLTKRVMMNMRWAVNFPGEFGIKMPYLIVNKIGIERVEVLKEVKKEKSNESNVGDLEL LKGMCFWMRRNLEVLETENREMKQYLEDMRLGVSARNSRREANGPVKRVVPRSIGSLDEFDQWKSKKNDGEGNGQRELKKPANKVTNLESELQKAIKAAS S

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57990			unknown protein		Potri.001G145400 [exp]	0	1
AT5G07670			RNI-like superfamily protein (...		Potri.001G125800 [exp]	3.46	0.9610
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Potri.014G117700 [exp]	4.24	0.9589
AT4G25270		OTP70	organelle transcript processin...		Potri.015G128800 [exp]	4.69	0.9648
AT5G65840			Thioredoxin superfamily protei...		Potri.014G012100 [exp]	5.29	0.9670
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.016G085300 [exp]	6.70	0.9577
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Potri.010G110100 [exp]	7.14	0.9619
AT1G48570			zinc finger (Ran-binding) fami...		Potri.012G046500 [exp]	9.38	0.9433
AT2G03050		SOLDAT10, EMB93	SINGLET OXYGEN-LINKED DEATH AC...		Potri.010G167400 [exp]	12.64	0.9438
AT3G46660		UGT76E12	UDP-glucosyl transferase 76E12...		Potri.001G245900 [exp]	12.68	0.9582
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.018G142100 [exp]	16.52	0.9551

Compare expression of checked genes

Potri.001G145400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.