Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35380 458 / 5e-163 Peroxidase superfamily protein (.1.2) AT5G66390 330 / 2e-112 Peroxidase superfamily protein (.1) AT2G18150 327 / 3e-111 Peroxidase superfamily protein (.1) AT1G44970 324 / 7e-110 Peroxidase superfamily protein (.1) AT4G36430 323 / 7e-110 Peroxidase superfamily protein (.1) AT2G18140 310 / 2e-104 Peroxidase superfamily protein (.1) AT4G16270 309 / 5e-104 Peroxidase superfamily protein (.1) AT3G50990 308 / 1e-103 Peroxidase superfamily protein (.1) AT5G06720 297 / 1e-99 ATPA2 peroxidase 2 (.1) AT5G19890 288 / 6e-96 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G019300 [exp] 337 / 2e-115 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 332 / 4e-113 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.008G103200 [exp] 324 / 3e-110 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.002G031200 [exp] 321 / 8e-109 AT1G44970 492 / 6e-176 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 300 / 5e-101 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 297 / 7e-100 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 294 / 1e-98 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 294 / 2e-98 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132900 [exp] 293 / 4e-98 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040107 [exp] 417 / 3e-139 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10010634 [exp] 337 / 7e-115 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10041784 [exp] 328 / 8e-112 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10029094 [exp] 297 / 1e-99 AT1G68850 439 / 1e-155 Peroxidase superfamily protein (.1) Lus10013065 [exp] 296 / 3e-99 AT1G68850 431 / 2e-152 Peroxidase superfamily protein (.1) Lus10029065 [exp] 296 / 1e-98 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1) Lus10034207 [exp] 290 / 4e-97 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10017069 [exp] 286 / 1e-94 AT4G16270 392 / 3e-136 Peroxidase superfamily protein (.1) Lus10034204 [exp] 285 / 2e-94 AT5G05340 336 / 9e-115 Peroxidase superfamily protein (.1) Lus10027989 [exp] 279 / 3e-92 AT5G06720 400 / 1e-139 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.001G145800.1 pacid=42790855 polypeptide=Potri.001G145800.1.p locus=Potri.001G145800 ID=Potri.001G145800.1.v4.1 annot-version=v4.1 ATGTCATGTGATTTCTCAAGGAATCCCTTTACAATGGTCTTTATCACTTTACTGGTTTTGGTCTTGCAAAGCTTGTCGACCTTTGGTGATGAACAACTTT TAGTCCGTGACTATTACAAGGAAACATGCCCTATGGTTGAAGAGATTGTTAGGTATAATCTTCAGTTTGCCGTGCTTAAAAATCCAAGAATGGCCGCCTC TCTGCTTCGCTTGCATTTTCATGATTGCTTCGTTATGGGATGCGATGCATCGGTTCTTCTAGACAGCTATGGAGGCATGGTCAGTGAAAAGCAGGCAGGG CCTAACGTGAACTCATTGCGTGGATTCGAAGTCATTGATAGGATCAAGTATCAATTGGAAGAAGCATGCCCTCTCATAGTCTCATGTGCTGATATCTTAG CCATTGCTGCTCGTGATGCTGTTGCAGTGAGAGGTGGCCCAGGTTGGGAGGTTTATCTAGGCAGAAAGGACTCCCTCAAGGCAAGTTTTGATGGTGCCAA TCAGTTTATACCCGCACCAAATTCCTCTCTGGAGACTCTCATTGCCAATTTTAAACAACATGGTCTTGACATAGGAGACTTGGTTGCTTTATCAGGTAGC CACACGATGGGAAAGGCAAGATGCTTAAGCTTTAGGCAACAAATACACGATGAGAGTGCTGAAGAACATTACGATAAATACAAGAGATACACCCCCTTTC GAAGAATCCTACGGTCCATATGTCCAAAAACAGGAAAAGACAATCAATTGGCTCCGCTTGATTTTGAAACCCCGGCTAGATTTGACAACCACTATTTCCT CAACATTCTTGAGGGAAGAGGGTTGCTGGGGTCCGATAACGTGTTGGTGACGGAAGATCATGAGGGGGAGATAAGAAAGCAGGTGTGGGCTTATGCCTCT GATCAAAAGCTTTTCTTCGCATCGTTTGCCAATTCTATGATAAAGATGGGGAATATTAACGTACTTTATGGGAATGAAGGAGAGGTCAGGAAGAATTGTA GGTTTGTCAACACCTAA
AA sequence Show only first row Show all	>Potri.001G145800.1 pacid=42790855 polypeptide=Potri.001G145800.1.p locus=Potri.001G145800 ID=Potri.001G145800.1.v4.1 annot-version=v4.1 MSCDFSRNPFTMVFITLLVLVLQSLSTFGDEQLLVRDYYKETCPMVEEIVRYNLQFAVLKNPRMAASLLRLHFHDCFVMGCDASVLLDSYGGMVSEKQAG PNVNSLRGFEVIDRIKYQLEEACPLIVSCADILAIAARDAVAVRGGPGWEVYLGRKDSLKASFDGANQFIPAPNSSLETLIANFKQHGLDIGDLVALSGS HTMGKARCLSFRQQIHDESAEEHYDKYKRYTPFRRILRSICPKTGKDNQLAPLDFETPARFDNHYFLNILEGRGLLGSDNVLVTEDHEGEIRKQVWAYAS DQKLFFASFANSMIKMGNINVLYGNEGEVRKNCRFVNT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35380			Peroxidase superfamily protein...		Potri.001G145800 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050500 [exp]	1.41	0.8621
AT4G33180			alpha/beta-Hydrolases superfam...		Potri.006G219400 [exp]	1.73	0.8244
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019500 [exp]	2.00	0.8372
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.010G054100 [exp]	2.00	0.8219
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.007G123000 [exp]	2.82	0.7968
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.008G008700 [exp]	9.16	0.7524
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Potri.004G019700 [exp]	10.19	0.7249
					Potri.019G129532 [exp]	12.16	0.7379
AT5G25820			Exostosin family protein (.1)		Potri.006G239000 [exp]	14.07	0.7674
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G037400 [exp]	15.87	0.7335

Compare expression of checked genes

Potri.001G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.