Plant FIBer expression Database

Potri.001G146000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G07610 56 / 2e-08 F-box family protein (.1)
AT1G33530 43 / 0.0003 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G181000
[exp]
627 / 0 AT5G07610 55 / 4e-08 F-box family protein (.1)
Potri.018G132800
[exp]
57 / 1e-08 AT5G07610 158 / 1e-43 F-box family protein (.1)
Potri.015G028500
[exp]
47 / 2e-05 AT5G49610 78 / 1e-15 F-box family protein (.1)
Potri.019G013900
[exp]
44 / 9e-05 AT5G03970 397 / 2e-136 F-box associated ubiquitination effector family protein (.1.2)
Potri.010G254000
[exp]
42 / 0.0004 AT5G07610 149 / 1e-40 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042547
[exp]
47 / 1e-05 AT5G03970 405 / 3e-140 F-box associated ubiquitination effector family protein (.1.2)
Lus10015048
[exp]
45 / 5e-05 AT5G07610 74 / 3e-14 F-box family protein (.1)
Lus10022006
[exp]
43 / 0.0004 AT5G03970 400 / 2e-138 F-box associated ubiquitination effector family protein (.1.2)
Lus10042989
[exp]
40 / 0.001 AT5G07610 82 / 9e-19 F-box family protein (.1)
PFAM info
Representative CDS sequence
>Potri.001G146000.3 pacid=42788602 polypeptide=Potri.001G146001.1.p locus=Potri.001G146000 ID=Potri.001G146000.3.v4.1 annot-version=v4.1
ATGGAGGATCAGAAGACAGATTGTTCCAGCATTATTTCTGATATGGGCGCAAAGGGTCTCGTTTGCCATTATCAGTTTGAAGAAGGGTCGTCTCAGTTTG
TTTTTCTAGACATTGACAAAGAAACAGGAGGCGCCAGTATCAACAACTCCCTTAATTTCTCCACCAGCACTTATCTGCATTTTATCTCTTCATCTAATGG
CTTGCTTTTATTGTCTAGTTTTGGGGAGAATCAGCTCAACTATCATGTATTCAATCCCTTTACCAAGCAGTCTGTGACTCTTCCACCGCATGGTATTACC
AGGCAAGTCATCAGGTCAGGTCTCGCTTTTGATGGAAAACAGTATCAGGTTATGCTTGTACATGCTTTCAAAGATGAAGAGAATGGCTTGGGCCCGCTTC
CTGATGATATTGAACTGGAAATCTTCTCTTCCGAAACTGGGGCTTGGAGAAACCATCAACCCTTGAGTTTGTCTTTGAATGTTGAAGTACCTGTCTGTGA
GTTTCCTCAGTTGAACGCAACCCCACTTTTTTCCAATGGAGCTATTCATTGGGAAATAAGTGGACGGTTGCTTGTTTATCATGTTAAAGATGATTACTGT
GAAGTAATTGAACTGCCAAATGTTTTTGAAGATTGGTCCTGGCAATCAACAATGACTTACAGGCGATGCTTGTGGGAATCTGAGGGGAGAGTACACTACA
CTTACACTGATTTTGATGGGGTTCATACCTGGAATCTCCTCAAGGAATATGAGCATGATGTCTACTCACACAATAATGTCTATGACAGCAAAAAATTCAG
GTGGGCATTAGTATATACTATCGATCATAAAGAGTTGGCAAAACAGGATCCTGATATTCTCTATCTTGGTAATCAGTGGGAGCCTCACAACATATCTCCT
TTTGCTTATGTTGAAGATTCCGAGACCATGTATTTGCAGCTTCCAGGAATTGTTGTAGCATACAATACCAAAAATCGAGTTTTGCAGAAAGTATGCAAGT
ACAAATTTCCAGGCATCGATTTTAATTGCTGTTTTTTCTTCCCCTTCATCCACAGCAATGAGTGCCACCAGAAAAATGCTAGCAAATCACTACAAGTTGG
AGAAGTGGTTGATTTACCTATAGAAAAAGAGGTGAATTCGTTTTCGTTTTAA
AA sequence
>Potri.001G146000.3 pacid=42788602 polypeptide=Potri.001G146001.1.p locus=Potri.001G146000 ID=Potri.001G146000.3.v4.1 annot-version=v4.1
MEDQKTDCSSIISDMGAKGLVCHYQFEEGSSQFVFLDIDKETGGASINNSLNFSTSTYLHFISSSNGLLLLSSFGENQLNYHVFNPFTKQSVTLPPHGIT
RQVIRSGLAFDGKQYQVMLVHAFKDEENGLGPLPDDIELEIFSSETGAWRNHQPLSLSLNVEVPVCEFPQLNATPLFSNGAIHWEISGRLLVYHVKDDYC
EVIELPNVFEDWSWQSTMTYRRCLWESEGRVHYTYTDFDGVHTWNLLKEYEHDVYSHNNVYDSKKFRWALVYTIDHKELAKQDPDILYLGNQWEPHNISP
FAYVEDSETMYLQLPGIVVAYNTKNRVLQKVCKYKFPGIDFNCCFFFPFIHSNECHQKNASKSLQVGEVVDLPIEKEVNSFSF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G07610 F-box family protein (.1) Potri.001G146000
[exp]
0 1
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.006G085500
[exp]
16.24 0.8143 CYP716A8
AT3G29170 Eukaryotic protein of unknown ... Potri.016G054301
[exp]
16.88 0.8178
AT1G27330 Ribosome associated membrane p... Potri.001G057150
[exp]
26.64 0.8420
AT2G45260 Plant protein of unknown funct... Potri.014G067600
[exp]
32.07 0.8334
AT1G20760 Calcium-binding EF hand family... Potri.002G008300
[exp]
33.70 0.8424
AT1G72770 HAB1 HYPERSENSITIVE TO ABA1, homolo... Potri.001G198400
[exp]
36.98 0.8132
AT5G04420 Galactose oxidase/kelch repeat... Potri.008G030901
[exp]
39.11 0.8343
AT5G50460 secE/sec61-gamma protein trans... Potri.015G097300
[exp]
48.28 0.8160 SEC61.2
AT4G36760 ATAPP1 ARABIDOPSIS THALIANA AMINOPEPT... Potri.018G145584
[exp]
49.19 0.7671
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.014G167550
[exp]
49.79 0.8167

Potri.001G146000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.