Plant FIBer expression Database

Pt-TOM2.2 (Potri.001G146100) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-TOM2.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G32400 329 / 6e-114 TOM2A tobamovirus multiplication 2A (.1.2.3)
AT2G20740 107 / 3e-28 Tetraspanin family protein (.1.2.3)
AT4G28770 106 / 5e-27 Tetraspanin family protein (.1.2)
AT2G20230 100 / 1e-24 Tetraspanin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G087800
[exp]
429 / 2e-153 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3)
Potri.002G253500
[exp]
119 / 7e-32 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1)
Potri.013G134200
[exp]
97 / 5e-24 AT2G20740 239 / 2e-80 Tetraspanin family protein (.1.2.3)
Potri.019G101800
[exp]
97 / 6e-24 AT2G20740 238 / 1e-79 Tetraspanin family protein (.1.2.3)
Potri.011G050900
[exp]
92 / 2e-22 AT2G20740 223 / 4e-74 Tetraspanin family protein (.1.2.3)
Potri.004G041500
[exp]
81 / 6e-18 AT2G20740 226 / 3e-75 Tetraspanin family protein (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011042
[exp]
380 / 4e-134 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3)
Lus10030939
[exp]
378 / 5e-133 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3)
Lus10003011
[exp]
316 / 4e-109 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3)
Lus10040108
[exp]
263 / 8e-89 AT1G32400 240 / 3e-80 tobamovirus multiplication 2A (.1.2.3)
Lus10022841
[exp]
111 / 6e-29 AT2G20230 294 / 2e-100 Tetraspanin family protein (.1)
Lus10039817
[exp]
104 / 1e-26 AT2G20740 266 / 3e-90 Tetraspanin family protein (.1.2.3)
Lus10011910
[exp]
102 / 1e-25 AT2G20230 281 / 2e-95 Tetraspanin family protein (.1)
Lus10018584
[exp]
97 / 8e-24 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0347 Tetraspannin PF00335 Tetraspanin Tetraspanin family
Representative CDS sequence
>Potri.001G146100.8 pacid=42788089 polypeptide=Potri.001G146100.8.p locus=Potri.001G146100 ID=Potri.001G146100.8.v4.1 annot-version=v4.1
ATGGCGTGTAAAGGGTTCTTGGAATGCCTACTGAAGCTCCTTAACTTCTTGCTGACTCTTGTGGGTCTGGCTATGATTGGTTATGGGATCTACTTGTTTG
TTGAGTATAAAAGAGCGGATGACAATGTGGGCCTAGTGTCGACGCCGAGTGATGGTCAGGGTTTGACGCTTCTTGGCCGCCCCATGCTTATTGCCGTGTC
TCTTTCGGAAAGCATCCTTGATAAGCTTCCGAAAGCTTGGTTCATATATTTATTTATTGCTGTAGGAGTAATTCTCTTTGTCATCTCTTGTTTTGGTTGT
ATTGGAGCTGCAACACGGAATGGATGCTGCTTGACTTGTTATTCAGTGTTGATCATCTTGTTGATATTGGTAGAGTTGGGATGTGCAGCCTTCATATTCT
TTGACAAAAGCTGGAAAGAAGTACTCCCAACTGACAAAAGTGGTGATTTTGACATGATATATAAATTCCTCAAAGAAAACTGGAACATTGTCAGATGGGT
TGCTCTTGGAATAGTTATTTTGGAGGCTTTGATTTTCTTGTTAACCCTTGTGGTTAGAGCAGCAAACAGGCCTGTAGAGTATGATAGCGACGACGAGTTC
ATTGCCTCCAGACAACAGACCCGGCAGCCTTTGCTTAACAGGCCACCAGCACCTGCAGCAGGAGTGCCTGTTACCGGAACCCTTGATCAGCGTCCAGGCA
GAAATGATGCTTGGAGTACACGAATGAGGGAAAAGTATGGGCTTGATACATCAGAGTTCTCATACAACCCATCCGAGCCACACAGGCTCCAGCCAGCAGC
TGCACAGCCTACCGAGGAAAGGAGTCGTTGCACCATCATGTGA
AA sequence
>Potri.001G146100.8 pacid=42788089 polypeptide=Potri.001G146100.8.p locus=Potri.001G146100 ID=Potri.001G146100.8.v4.1 annot-version=v4.1
MACKGFLECLLKLLNFLLTLVGLAMIGYGIYLFVEYKRADDNVGLVSTPSDGQGLTLLGRPMLIAVSLSESILDKLPKAWFIYLFIAVGVILFVISCFGC
IGAATRNGCCLTCYSVLIILLILVELGCAAFIFFDKSWKEVLPTDKSGDFDMIYKFLKENWNIVRWVALGIVILEALIFLLTLVVRAANRPVEYDSDDEF
IASRQQTRQPLLNRPPAPAAGVPVTGTLDQRPGRNDAWSTRMREKYGLDTSEFSYNPSEPHRLQPAAAQPTEERSRCTIM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G32400 TOM2A tobamovirus multiplication 2A ... Potri.001G146100
[exp]
0 1 Pt-TOM2.2
AT4G05050 UBQ11 ubiquitin 11 (.1.2.3.4) Potri.010G170801
[exp]
1.73 0.7328
AT5G08040 TOM5 mitochondrial import receptor ... Potri.015G058500
[exp]
2.82 0.7396
Potri.006G071801
[exp]
6.70 0.7090
AT5G55340 MBOAT (membrane bound O-acyl t... Potri.016G014700
[exp]
14.49 0.6860
AT3G03010 Peptidyl-tRNA hydrolase II (PT... Potri.013G082850
[exp]
15.87 0.6872
AT5G49650 XK2, XK-2 XYLULOSE KINASE 2, xylulose ki... Potri.019G077600
[exp]
20.34 0.6487
Potri.003G203701
[exp]
28.98 0.6087
AT3G01130 unknown protein Potri.009G125832
[exp]
29.44 0.6663
AT3G07568 unknown protein Potri.014G197400
[exp]
29.84 0.6331
Potri.017G038601
[exp]
37.04 0.5011

Potri.001G146100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.