Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46560 349 / 2e-118 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011046 [exp] 384 / 7e-132 AT5G46560 345 / 1e-116 unknown protein Lus10003015 [exp] 380 / 2e-129 AT5G46560 343 / 7e-115 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09402 [poplar] [flax] MSC Man1-Src1p-C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.001G146500.1 pacid=42787716 polypeptide=Potri.001G146500.1.p locus=Potri.001G146500 ID=Potri.001G146500.1.v4.1 annot-version=v4.1 ATGTCTTCAACACCAAAAAGGCGCCCAAAACGGGATTTATCCAGTAGCTCTTCGCATCCGTACACTATATCATCTAAAATTGAACCACCCCATAACTTGT TTCCTTCAAAGCAAGAGTTTCTCAGACTCATCGCAGTACTTGCAATCGCATCCTCGGTAGCTCTGACCTGTAACTTCATTGCTAATTACATCGATCATTC TACAAAACCCTTCTGCGATACCAGTTTAGACTCTTCAGATTCTTTATCCAATTCATGTGAACCTTGTCCAAGAAACGGAGAATGTAATCAGGGAAAGCTA GAATGTGCTCGTGGCTATAGAAAACACAGAAACACATGCATAGAAGATGGCGATGTTTATGAAAGAGCTAAGAAACTTTTGGAGGGGGTAGAAAATCATC TCTGTGAAGCCTATGCTGATTTCCTGTGCTATGGGACTGGAATAGTGTGGGTCCAAGAGGATGACATATTGAATGATTTGGATGGACACCAGCTGTTGGA AAACTATAGCTCAGACAATCCAGTGTATGTGTATACCAAGATGAAGGCAATGGAAACCATTAGTGAAGAATTGCAGATAAGGACAAATCCTAATGGGAAG AAAGAGTTTAAGTGTCCAGACCTGTTGGTGGAACATTACAAACCATTTACCTGTCACCTTCGTCAATGGATTTCTGAGCATGCTCTTGTTATCGTGCCAG TTTGTGCATTGGTTGTGGGATTTGCATTTTTAGTTTGGAAAATTCGACGGAGATGGTATCTATCAACCAGAGGGGAAGAACTTTACCACCAGGTTTGTGA CATACTTGAGGAAAGGGCCTTGATGTCAAAGAGAGTAAACGCAGAATGTGAACCTTGGGTGGTGGCCTCTCGATTACGGGATCATCTGCTTTCTCCCAAA GAAAGGAAAGATTTTGTTTTATGGAAAAAGGTTGAGGACTTAGTGCGGGAAGATTCTCGAGTAGATCGTTATCCTAAGCTAGTGAAGGGTGAATCAAAAG TGGTGTGGGAATGGCAAGTTGAAGGTTCGTTGAGCTCGGGGAGAATGAGAAAAAAAGTAGAGTCAAGCAAATTAAAGTCCAATGATGGTGTAAAAGAAAA TTTTGATAAAGAACGCCATGAGTTGAAGCCTGAGCCCAAGATACTGATGTTTTGA
AA sequence Show only first row Show all	>Potri.001G146500.1 pacid=42787716 polypeptide=Potri.001G146500.1.p locus=Potri.001G146500 ID=Potri.001G146500.1.v4.1 annot-version=v4.1 MSSTPKRRPKRDLSSSSSHPYTISSKIEPPHNLFPSKQEFLRLIAVLAIASSVALTCNFIANYIDHSTKPFCDTSLDSSDSLSNSCEPCPRNGECNQGKL ECARGYRKHRNTCIEDGDVYERAKKLLEGVENHLCEAYADFLCYGTGIVWVQEDDILNDLDGHQLLENYSSDNPVYVYTKMKAMETISEELQIRTNPNGK KEFKCPDLLVEHYKPFTCHLRQWISEHALVIVPVCALVVGFAFLVWKIRRRWYLSTRGEELYHQVCDILEERALMSKRVNAECEPWVVASRLRDHLLSPK ERKDFVLWKKVEDLVREDSRVDRYPKLVKGESKVVWEWQVEGSLSSGRMRKKVESSKLKSNDGVKENFDKERHELKPEPKILMF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G46560			unknown protein		Potri.001G146500 [exp]	0	1
AT1G50730			unknown protein		Potri.001G356700 [exp]	6.70	0.7817
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.007G012700 [exp]	12.64	0.7880
AT5G61450			P-loop containing nucleoside t...		Potri.001G125700 [exp]	21.07	0.7687
AT4G38280			unknown protein		Potri.004G205200 [exp]	31.30	0.7781
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060000 [exp]	31.81	0.7783
AT5G15070			Phosphoglycerate mutase-like f...		Potri.004G129900 [exp]	33.91	0.7553
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.003G038800 [exp]	34.94	0.7689	Pt-ATMSI4.2,NFC907
					Potri.013G034600 [exp]	35.21	0.7506
					Potri.003G025350 [exp]	42.66	0.7268
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	44.00	0.7732

Compare expression of checked genes

Potri.001G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.