Plant FIBer expression Database

Potri.001G146700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59840 111 / 2e-33 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040110
[exp]
123 / 4e-38 AT3G59840 115 / 4e-35 unknown protein
Lus10030936
[exp]
119 / 1e-36 AT3G59840 118 / 4e-36 unknown protein
PFAM info
Representative CDS sequence
>Potri.001G146700.1 pacid=42791365 polypeptide=Potri.001G146700.1.p locus=Potri.001G146700 ID=Potri.001G146700.1.v4.1 annot-version=v4.1
ATGGGTCTCCTCTCGTGGTTCCAAAGAAGCTCCAAACCCGAGTCAAAATCCGCTTCTAGCTCCACGAAACCCGAAACCTCCCCGCCCTCCGAAATCCCCG
GTATGAACGGCGCCGTCGAGGTACCCCGACCGCCCCCCAAGAACGTCACCGTTTTCGAGTTTGGGTCTGTATCTGCTACTGCGGATAAGGTTACTCTTGC
CGGGTTCTGCCCCGTATCCGACGACCTCGAGCCTTGCCGCTGGGAAATCATGCCGGCGAGTGATTCCGACGCTCCTCAGTTTCGCGTTGTATTTTAA
AA sequence
>Potri.001G146700.1 pacid=42791365 polypeptide=Potri.001G146700.1.p locus=Potri.001G146700 ID=Potri.001G146700.1.v4.1 annot-version=v4.1
MGLLSWFQRSSKPESKSASSSTKPETSPPSEIPGMNGAVEVPRPPPKNVTVFEFGSVSATADKVTLAGFCPVSDDLEPCRWEIMPASDSDAPQFRVVF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59840 unknown protein Potri.001G146700
[exp]
0 1
AT1G04555 unknown protein Potri.008G173000
[exp]
5.56 0.9122
AT5G30495 Fcf2 pre-rRNA processing prote... Potri.008G206400
[exp]
7.81 0.8421
AT3G11500 Small nuclear ribonucleoprotei... Potri.006G211100
[exp]
10.19 0.8742
AT1G73770 unknown protein Potri.012G046000
[exp]
13.49 0.9007
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Potri.015G013800
[exp]
20.12 0.8728
AT3G24506 unknown protein Potri.018G079700
[exp]
23.23 0.8830
AT3G44380 Late embryogenesis abundant (L... Potri.001G218400
[exp]
24.61 0.8829
AT5G24650 Mitochondrial import inner mem... Potri.015G000600
[exp]
25.98 0.8676
AT5G09320 VPS9B Vacuolar sorting protein 9 (VP... Potri.009G169600
[exp]
29.73 0.8854
Potri.004G178101
[exp]
30.16 0.8691

Potri.001G146700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.