Plant FIBer expression Database

Pt-DRT101.2 (Potri.001G146900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-DRT101.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G18070 749 / 0 DRT101 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012191
[exp]
852 / 0 AT5G18070 757 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1)
Lus10007545
[exp]
849 / 0 AT5G18070 756 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1)
Lus10007548
[exp]
615 / 0 AT5G18070 566 / 0.0 DNA-DAMAGE-REPAIR/TOLERATION 101, phosphoglucosamine mutase-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence
>Potri.001G146900.1 pacid=42790697 polypeptide=Potri.001G146900.1.p locus=Potri.001G146900 ID=Potri.001G146900.1.v4.1 annot-version=v4.1
ATGAACGACAATCAAAAATCACTAATCCTCAACTCCTCGACTCAGTACCCACTTCCTCAAGGAGTGAAGTTATCGTATGGTACAGCAGGGTTCAGAGCAG
ATGCATCAATCCTGGAATCAACAGTATTCAGGGTTGGGATATTGGCAGCTCTTCGATCTTTGAAAACCCAAGCACTGACCGGGTTAATGATCACCGCTTC
TCATAATAAAGTCAATGACAATGGTGTCAAAATCGCTGACCCCAGTGGTGGCATGCTCACTCAGGAATGGGAGCCCTTCGCTGATGCCATTTCCAATTCC
CCCACTCCACAACATCTCGTTCAGTTAATAGATGAATTTGTGAAGAAGGAGAACATCCGGTTTGATGGAGCGCGGTCTGCGGAGATATTGTTGGGAAGAG
ACACGAGGCCTAGTGGTGAATCACTCCTTGAAGCTGCTAAACAGGGTGTCTATTCAATCGTTGGAGCTACTGCCACTGATATGGGAATTTTAACTACTCC
CCAATTACATTGGATGGTTCGTGCTAGAAACAAGGGCATGAAAGCGACTGAACTTGATTACTTTGAACAGCTTTCAAGCTCATTCAGGTGCTTGGTTGAT
CTGACTCCAAATCAAATCAAAATGAACAAGACAGATGACAAGTTAGTTGTGGATGGGGCTAATGGTGTGGGTGGAGAAAAACTTGAAGTGTTAAAGAAGA
TGTTGAACAGCATGGTTATTGAGGTTCGTAATTCTGGAAAAGAAGGAGGTGTACTTAATGAAGGAGTTGGTGCTGATTATGTGCAGAAAGAAAAAGTTGT
TCCACAAGGATTCTATTTGAAAGATGTTGGGATTAGGTGTGCAAGTTTGGATGGAGATGCTGATCGGCTTGTTTATTTTTCTGTGCAATCAAATAATGCC
AGCAATATCGATCTTGTTGACGGGGACAAGATACTATCTTTGTTTGCTTTGTTCATCAAGGAGCAACTAAGTATTCTTAAAATGGAAGGGGGTGATCATG
TAGATGAAAATTATGAAGCTCGTCTTGGGGTTGTACAAACAGCTTATGCAAATGGAGCATCCACAGATTATCTCAAACAGTTGGGCTTAGAAGTTGTGTT
TACTCCTACGGGAGTGAAATACTTGCATGAGAAAGCTGCTGAGTATGATATTGGGATCTATTTTGAGGCCAATGGCCATGGCACCATCCTGTTCTCAGAG
GGCTTCTTATCTTGGTTAGATGCCAGAAATAATGAGCTCTCTTCCAAATCTAAAGGTTCAGAACAGCAAAAGGCTGCTTTGCGACTATTGGCAGTTAGTA
ACTTGATCAACCAAGCTGTTGGGGATGCTTTAAGTGGTTTGCTGTTGGTAGAAGCCATTTTACAATACAAGGGATGGTCCATACACAACTGGAGTGAGCT
TTACCATGACCTACCAAGCAGGCAGCTTAAGGTTAAAGTTGTGGACAGAACTGCTGTTGTTACGGCAAATGCTGAAACTGTGGTTGTGAGACCCCCTCTC
ATTCAAGAAGCCATCAACGTAGAAGTTGCAAAATACCCTCGAGGGCGATCATTCATACGGCCATCTGGAACAGAGGATGTCATACGTATATATGCAGAGG
CATCAATCCAAGAAGCAGCAGACAGCCTTGCCAACTCCGTAGCAAAACTTGCGGACCAGTTCCTCGGATTTGGCAACTCCGGATAG
AA sequence
>Potri.001G146900.1 pacid=42790697 polypeptide=Potri.001G146900.1.p locus=Potri.001G146900 ID=Potri.001G146900.1.v4.1 annot-version=v4.1
MNDNQKSLILNSSTQYPLPQGVKLSYGTAGFRADASILESTVFRVGILAALRSLKTQALTGLMITASHNKVNDNGVKIADPSGGMLTQEWEPFADAISNS
PTPQHLVQLIDEFVKKENIRFDGARSAEILLGRDTRPSGESLLEAAKQGVYSIVGATATDMGILTTPQLHWMVRARNKGMKATELDYFEQLSSSFRCLVD
LTPNQIKMNKTDDKLVVDGANGVGGEKLEVLKKMLNSMVIEVRNSGKEGGVLNEGVGADYVQKEKVVPQGFYLKDVGIRCASLDGDADRLVYFSVQSNNA
SNIDLVDGDKILSLFALFIKEQLSILKMEGGDHVDENYEARLGVVQTAYANGASTDYLKQLGLEVVFTPTGVKYLHEKAAEYDIGIYFEANGHGTILFSE
GFLSWLDARNNELSSKSKGSEQQKAALRLLAVSNLINQAVGDALSGLLLVEAILQYKGWSIHNWSELYHDLPSRQLKVKVVDRTAVVTANAETVVVRPPL
IQEAINVEVAKYPRGRSFIRPSGTEDVIRIYAEASIQEAADSLANSVAKLADQFLGFGNSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G18070 DRT101 DNA-DAMAGE-REPAIR/TOLERATION 1... Potri.001G146900
[exp]
0 1 Pt-DRT101.2
AT3G60800 DHHC-type zinc finger family p... Potri.001G117100
[exp]
6.24 0.8531
AT1G08970 CCAAT NF-YC9, HAP5C "nuclear factor Y, subunit C9"... Potri.010G032301
[exp]
7.48 0.8284
AT3G07560 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY... Potri.014G197200
[exp]
10.58 0.8231
AT5G04260 WCRKC2 WCRKC thioredoxin 2 (.1) Potri.010G225701
[exp]
12.72 0.8038
AT2G20930 SNARE-like superfamily protein... Potri.004G176500
[exp]
18.57 0.7832
AT1G64385 unknown protein Potri.001G092300
[exp]
22.91 0.8087
AT1G26640 Amino acid kinase family prote... Potri.010G162900
[exp]
23.62 0.7309
AT2G17200 DSK2 ubiquitin family protein (.1) Potri.004G205100
[exp]
25.80 0.7607
AT3G04710 TPR10 tetratricopeptide repeat 10, a... Potri.005G054800
[exp]
31.67 0.7457
AT5G09580 unknown protein Potri.001G285000
[exp]
32.15 0.7880

Potri.001G146900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.