Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31870 112 / 9e-28 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087200 [exp] 158 / 3e-44 AT1G31870 418 / 1e-140 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034532 [exp] 102 / 5e-24 AT1G31870 451 / 4e-154 unknown protein Lus10033140 [exp] 100 / 2e-23 AT1G31870 454 / 4e-153 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09736 [poplar] [flax] Bud13 Pre-mRNA-splicing factor of RES complex
Representative CDS sequence Show only first row Show all	>Potri.001G147100.2 pacid=42793139 polypeptide=Potri.001G147100.2.p locus=Potri.001G147100 ID=Potri.001G147100.2.v4.1 annot-version=v4.1 ATGGCTAGAACTAAAAGAAGAAAAGCTGAACCGGACGGCCCTGGCGTTTTAGTTGTGGATGAAGATCCTGTTTGGAAAAAACCAGTAAAGCTTGAAGAAG AGGAAGAACAGCTGGAGCCTCAAGTTCACGAAGAAGACATAGAAGTTAAACGAACGAGGATGCTGGAGCTAATTAGAGCTCAACGCGCTTACAATGCAAT AGCAGAGGATGGAAGTCGTTGGGTTACATTTTCTCCTAAACATTTGTCATCACCTCATAAACGAAGGTATCGAAATGATACACCATCTCCAGAACCGCCG ATGAAGCCTTCAGGAGAACGAAAACTCCATCATTCTCCATCACCCGAACCTGATACGAAATCCAAACACTCCAGTGGTCTGAATCTGCCTTTGAGAGAAA AAACTGATTTGTCTACTCCAAGACAACAGAGGCGACGGCACTATTCTCCTTCACCGAAACCCGAGTTAGATCTTTCACCCCCAAGGAGAAGCAAGAAGGA TGTTGAGGGATCAGGATCACCTGATAATTCTCAATCATCACGGCAGCGTTCAACTCAGAGTGCTTCCTCAATGGAACAACCAAAAACTGGTCTGATTACT GGTCGTGATAAGCGGGAAGAAATTTTTAAAACTAAGAAGGACGCATCATTGTTGGATGATCTGGAGCTTGACAAAATGCTGAAGGATAGAAAAAAGCGCT CTGAACCTGTTCTGGCAGACCTAGGGGATAGTGAGAAGATGACGGAATCGGGATTTATAATTCCCCAGGACATACCAAGTCCCAGCTGGATAGAACGAGG ATTTGATGCTGCACCAGATCGATATGGTATAAAACCAGGAAGACTTTGGGATGGGGTTGATCGAAGTAATGGTGAGTTCATATTTGAATTAATTGCTCAC TCTTGCACGGACTAA
AA sequence Show only first row Show all	>Potri.001G147100.2 pacid=42793139 polypeptide=Potri.001G147100.2.p locus=Potri.001G147100 ID=Potri.001G147100.2.v4.1 annot-version=v4.1 MARTKRRKAEPDGPGVLVVDEDPVWKKPVKLEEEEEQLEPQVHEEDIEVKRTRMLELIRAQRAYNAIAEDGSRWVTFSPKHLSSPHKRRYRNDTPSPEPP MKPSGERKLHHSPSPEPDTKSKHSSGLNLPLREKTDLSTPRQQRRRHYSPSPKPELDLSPPRRSKKDVEGSGSPDNSQSSRQRSTQSASSMEQPKTGLIT GRDKREEIFKTKKDASLLDDLELDKMLKDRKKRSEPVLADLGDSEKMTESGFIIPQDIPSPSWIERGFDAAPDRYGIKPGRLWDGVDRSNGEFIFELIAH SCTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G31870			unknown protein		Potri.001G147100 [exp]	0	1
AT5G61580		PFK4	phosphofructokinase 4 (.1.2)		Potri.001G079450 [exp]	1.00	0.8694
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.006G105800 [exp]	4.89	0.7868	WAVE4.1
					Potri.019G120050 [exp]	6.32	0.8010
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Potri.001G152150 [exp]	8.48	0.8127
					Potri.019G087800 [exp]	14.28	0.7691
AT3G22970			Protein of unknown function (D...		Potri.002G046300 [exp]	16.43	0.7338
AT3G07660			Kinase-related protein of unkn...		Potri.001G370900 [exp]	17.20	0.7048
AT1G15780			unknown protein		Potri.003G014000 [exp]	18.43	0.7668
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.003G214200 [exp]	19.62	0.7893	CALS1.4
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159000 [exp]	20.14	0.7835

Compare expression of checked genes

Potri.001G147100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.