Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38740 360 / 3e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G56500 84 / 3e-18 haloacid dehalogenase-like hydrolase family protein (.1) AT4G39970 61 / 1e-10 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G21470 61 / 2e-10 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT3G48420 42 / 0.0003 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086900 [exp] 459 / 4e-166 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 387 / 6e-138 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 342 / 6e-119 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G135000 [exp] 209 / 9e-68 AT2G38740 176 / 4e-55 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 80 / 7e-17 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G077200 [exp] 77 / 6e-16 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 64 / 1e-11 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.007G095200 [exp] 62 / 3e-11 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040116 [exp] 374 / 1e-132 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10003018 [exp] 368 / 2e-129 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030930 [exp] 229 / 1e-76 AT2G38740 222 / 5e-74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030929 [exp] 177 / 8e-57 AT2G38740 165 / 1e-52 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10020699 [exp] 84 / 4e-18 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 81 / 3e-17 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10028605 [exp] 77 / 6e-16 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018906 [exp] 76 / 9e-16 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018435 [exp] 75 / 3e-15 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10023149 [exp] 57 / 2e-09 AT4G39970 423 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G147300.1 pacid=42793106 polypeptide=Potri.001G147300.1.p locus=Potri.001G147300 ID=Potri.001G147300.1.v4.1 annot-version=v4.1 ATGACGGTTTCTTCTGCAGAAAATATTGTTGATGATGCTACATTCTCTCTCTCCAGGCTTGCTCCTTTGGAAGCGATACTATTTGATGTTGATGGGACTC TCTGTGATTCAGATCCCCTCCACCACTATGCCTTCCGAGAAATGCTTCAAGAGATAAATTTCAATGACGGGGTCCCAATTACGGAGGAATTCTTTGTTCA GAATATTGCTGGCAAGCATAATGAGGATATTGCTTTGTCCCTCTTTCCCGATGATCTCCAGCGAGGCTTAAAATTCACGGAGGATAAGGAAGCCATGTTC CGAAGGTTGGCATCTGAGCAACTTAAGCCTATAAATGGTCTATACAAATTGAAGAAATGGGTTGAAGACCGTGGGCTGAAACGAGCTGCAGTTACGAATG CTCCAAGAGCAAATGCTGAACTCATGATCTCACTTCTGGGCCTCTCAGATTTTTTTCATGCTGTTATCATTGGGGATGAGTGTCAACATGCCAAACCACA CCCAGAACCCTACTTGAAGGCTCTTGAAGTACTCAATGTGTCAAAGGACCACACCTTTGTGTGCGAGGATTCTGTTTCAGGCATAAAAGCTGGGGTGGCC GCCGGGATGCCTGTTGTTGGTTTAACTACCAGAAACCCAGAACATTTATTGCTGGAGGCAAAGCCTACACTTCTTATAAAGGATTATGAAGATCCAAAGT TGTGGACAGCTCTGGAAGAACTTGATAAGCAAGCAGCTGCTGCAAAACCTACTGCTTGA
AA sequence Show only first row Show all	>Potri.001G147300.1 pacid=42793106 polypeptide=Potri.001G147300.1.p locus=Potri.001G147300 ID=Potri.001G147300.1.v4.1 annot-version=v4.1 MTVSSAENIVDDATFSLSRLAPLEAILFDVDGTLCDSDPLHHYAFREMLQEINFNDGVPITEEFFVQNIAGKHNEDIALSLFPDDLQRGLKFTEDKEAMF RRLASEQLKPINGLYKLKKWVEDRGLKRAAVTNAPRANAELMISLLGLSDFFHAVIIGDECQHAKPHPEPYLKALEVLNVSKDHTFVCEDSVSGIKAGVA AGMPVVGLTTRNPEHLLLEAKPTLLIKDYEDPKLWTALEELDKQAAAAKPTA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147300 [exp]	0	1
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.001G327800 [exp]	8.48	0.7794
AT5G19380		CLT1	CRT (chloroquine-resistance tr...		Potri.009G069400 [exp]	12.24	0.7442
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.006G275000 [exp]	12.24	0.8017	Pt-VHA1.2
AT4G30810		SCPL29	serine carboxypeptidase-like 2...		Potri.018G103100 [exp]	15.49	0.7062
AT5G47070			Protein kinase superfamily pro...		Potri.003G085300 [exp]	15.87	0.7808
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.016G011000 [exp]	16.97	0.6615
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Potri.007G021300 [exp]	26.70	0.7132
AT4G39640		GGT1	gamma-glutamyl transpeptidase ...		Potri.005G082800 [exp]	31.52	0.7221
AT5G61510			GroES-like zinc-binding alcoho...		Potri.004G233800 [exp]	36.63	0.7304	Pt-TED2.2
AT5G14760		AO	L-aspartate oxidase (.1)		Potri.001G348600 [exp]	39.24	0.7146

Compare expression of checked genes

Potri.001G147300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.