Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38740 350 / 3e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G56500 69 / 2e-13 haloacid dehalogenase-like hydrolase family protein (.1) AT4G21470 60 / 2e-10 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT4G39970 45 / 2e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G11570 45 / 3e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2) AT3G48420 44 / 8e-05 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147300 [exp] 387 / 6e-138 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 383 / 3e-136 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 321 / 8e-111 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G135000 [exp] 194 / 5e-62 AT2G38740 176 / 4e-55 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 68 / 6e-13 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G077200 [exp] 65 / 6e-12 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 57 / 4e-09 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.007G095200 [exp] 52 / 1e-07 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G127100 [exp] 47 / 5e-06 AT4G11570 493 / 2e-175 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003018 [exp] 343 / 7e-120 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040116 [exp] 336 / 1e-117 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030930 [exp] 211 / 2e-69 AT2G38740 222 / 5e-74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030929 [exp] 164 / 2e-51 AT2G38740 165 / 1e-52 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018906 [exp] 82 / 8e-18 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 80 / 4e-17 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10029840 [exp] 75 / 5e-15 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10020699 [exp] 71 / 7e-14 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10018435 [exp] 60 / 3e-10 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10006954 [exp] 51 / 3e-07 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [poplar] [flax] HAD PF13419 [poplar] [flax] HAD_2 Haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.001G147400.1 pacid=42789670 polypeptide=Potri.001G147400.1.p locus=Potri.001G147400 ID=Potri.001G147400.1.v4.1 annot-version=v4.1 ATGACAGTTTCTTCTGGTGAAAACTCGGTTGAGAGAAAAAGCTCTCTTTCTGGATTTGCTCCACTGGAAGCTGTATTATTTGATGTTGATGGAACTTTAT GCGATTCTGATCCCCTTCACTATTTTACCTTTCGAGAAATGCTTCAAGAGATAAATTTCAACGGAGGGGTTCCTATTACCGAGAAGTTCTTCTCTGAGAA ACTTTCTGGCAAGCATAATGAAGATATGGCTTTGGTTCTCTTCCCTGATGATATTGAAGGAGGCATGAAATTTCTTGCTGATAAAGAAGCTTTGTTTCGG AGATTGGTCCCAGAAAGATTGAAGGCTGTAAATGGCTTATACAAAATGAAGAAATGGGTTGAAGATCATGGCTTGAAACGGGCTGCAGTTACTAACGCTC CAAGAGAGAATGCTGAACTCATCATATCGATTCTGGGGCTCACAGATTTCTTTGAAGCTCTTATAATAGGAAGTGAATGTGAGCATCCAAAACCACACCC AGACCCCTACTTGAAGGCTCTTGAAGCACTCAAGGTGTCAAAAGACCACACTTTTGTATTTGAGGATTCTGTTTCAGGGATAAAAGCTGGAGTGGCAGCT GGGTTGCCCGTTGTTGGGTTGACTACAGGAAACCCAGAGCATGCGCTGATGGAAGCAAACCCTACCTTTCTCCTCAAGGATTATAATGATCCGAAACTCT GGGCAGCACTGGAAGAGCTTGAGAGTGCAGGAAAAGCTGTAGTTTGA
AA sequence Show only first row Show all	>Potri.001G147400.1 pacid=42789670 polypeptide=Potri.001G147400.1.p locus=Potri.001G147400 ID=Potri.001G147400.1.v4.1 annot-version=v4.1 MTVSSGENSVERKSSLSGFAPLEAVLFDVDGTLCDSDPLHYFTFREMLQEINFNGGVPITEKFFSEKLSGKHNEDMALVLFPDDIEGGMKFLADKEALFR RLVPERLKAVNGLYKMKKWVEDHGLKRAAVTNAPRENAELIISILGLTDFFEALIIGSECEHPKPHPDPYLKALEALKVSKDHTFVFEDSVSGIKAGVAA GLPVVGLTTGNPEHALMEANPTFLLKDYNDPKLWAALEELESAGKAVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.001G147400 [exp]	0	1
AT1G14780			MAC/Perforin domain-containing...		Potri.010G104600 [exp]	1.00	0.8863
AT1G59730		ATH7	thioredoxin H-type 7 (.1)		Potri.008G194100 [exp]	2.44	0.8443
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G047900 [exp]	5.47	0.8247
AT5G56260			Ribonuclease E inhibitor RraA/...		Potri.011G169700 [exp]	5.65	0.8292
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.003G002500 [exp]	11.61	0.8025
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175701 [exp]	12.00	0.8340
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.015G138900 [exp]	15.74	0.8031
AT3G48880			RNI-like superfamily protein (...		Potri.001G373900 [exp]	17.32	0.8005
AT3G07690			6-phosphogluconate dehydrogena...		Potri.003G203800 [exp]	17.88	0.7322
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Potri.007G047100 [exp]	20.00	0.7207	Pt-DIN11.1,2OGox15

Compare expression of checked genes

Potri.001G147400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.