Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60190 976 / 0 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT1G14830 957 / 0 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT2G44590 922 / 0 ADL1D DYNAMIN-like 1D (.1.2.3) AT5G42080 870 / 0 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT3G61760 857 / 0 ADL1B DYNAMIN-like 1B (.1) AT2G14120 281 / 2e-84 DRP3B dynamin related protein (.1.2.3) AT4G33650 269 / 6e-80 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT1G10290 210 / 3e-58 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1) AT1G59610 209 / 7e-58 DRP2B, CF1, ADL3 Dynamin related protein 2B, dynamin-like 3 (.1) AT1G60500 130 / 2e-31 DRP4C Dynamin related protein 4C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G135100 [exp] 1033 / 0 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 1021 / 0 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 967 / 0 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Potri.002G171200 [exp] 896 / 0 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 887 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.003G141000 [exp] 884 / 0 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.017G041800 [exp] 281 / 4e-84 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.007G118300 [exp] 280 / 8e-84 AT4G33650 1067 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 192 / 2e-56 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019506 [exp] 981 / 0 AT3G60190 1060 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10019170 [exp] 968 / 0 AT1G14830 1131 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10040117 [exp] 958 / 0 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10029001 [exp] 909 / 0 AT1G14830 1061 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) Lus10004007 [exp] 867 / 0 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1) Lus10003873 [exp] 862 / 0 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10023073 [exp] 852 / 0 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10001820 [exp] 846 / 0 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10030255 [exp] 829 / 0 AT3G61760 1052 / 0.0 DYNAMIN-like 1B (.1) Lus10014041 [exp] 261 / 3e-77 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family CL0023 [poplar] [flax] PF01031 [poplar] [flax] Dynamin_M Dynamin central region CL0023 [poplar] [flax] PF02212 [poplar] [flax] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Potri.001G147500.2 pacid=42791642 polypeptide=Potri.001G147500.2.p locus=Potri.001G147500 ID=Potri.001G147500.2.v4.1 annot-version=v4.1 ATGGCTACCATGGAGAGCTTGATTAGTCTTGTTAATAGAATACAGAGGGCCTGTACTATTCTCGGTGACTACGGCGGTGACTCTGGTGGCGCCGCTGCCG CTTCTTTGCCTACTCTCTGGGAGTCTCTTCCCTCTGTCGCCGTTGTTGGTGGCCAGAGTTCTGGAAAGTCATCAGTGTTGGAGAGCATTGTGGGTAGAGA TTTTCTTCCAAGAGGATCAGGGATCGTGACAAGGCGGCCTTTGGTTTTGCAACTGCACAAGACAGAACCAGGGATAACTGAGTATGCAGAGTTTCTTCAC AAGCAAAGGGAGAGATTCACAGATTTCGCTATGGTCCGAAAGGAAATTCAAGACGAAACTGATAAAATTACTGGGAAGTCAAAGCAGATATCTCCTGTTC CTATTCATCTGAGTATCTACTCCCCAAATGTTGTTAACTTGACTTTAATAGATTTGCCTGGTTTAACAAAAGTTGCAGTAGAGGGTCAGCCAGAGAGCAT TGTTAAGGACATCGAGAATATGGTTCGTTTATATGTTGAGAAGCCAAATTGCATTATTCTGGCCATAACTCCAGCCAATCAAGATATAGCAACATCTGAT GCTATCAAACTTGCTAGAGAAGTTGATCCAGCAGGTGAAAGGACATTCGGGGTGTTGACAAAGCTTGACTTGATGGATAAGGGAACAAATGCACAAGATG TTCTTGAAGGAAGGGCTTACCCGCTTCAACACCCTTGGGTTGGAATTGTTAACCGCTCTCAAGCTGATATTAATAAAAATGTGGATATGATTGCTGCTCG TCGAAGGGAGCGCGAGTTCTTTTCCACCAGTCCTGATTATGGACACTTGGCTGGCAGAATGGGTTCTGAATATCTTGCAAAACTTCTGTCCAAGCACTTG GAATCTGTAATTAAAACTCGCATACCAGGTATCACATCTTTAATAAATAGAAGCATCGATGATCTTGAATCAGAGTTGGATCACCTTGGTAGACCTGTTG CAATTGATGCTGGGGCTCAGCTATATACTATTCTAGAGTTATGCCGAGCATTTGATCGTGTATTCAAGGAACATTTGGATGGAGGGCGTCCTGGTGGTGA TCGAATTTATGGAGTTTTTGACTACCAGCTTCCTACTGCTTTGAGGAAGCTTCCATTTGACCGTCACTTGTCTCTGCAAAATGTAAGAAAAGTGGTTTCA GAGGCAGATGGATATCAACCTCATCTAATTGCACCAGAGCAAGGTTATCGACGTCTTATTGATGGTGCACTTAATTACTTCAGAGGCCCTGCTGAAGCTT CTGTAGATGCCGTTCACTTTATTTTGAAGGAGATCGTAAGGAGGTCAATTGGAGAAACCCAGGAGTTGAAGCGCTTTCCAACTCTTCAAGCTGAAATAGC TTCTGCAGCCTATGATGCACTGGAGAGGTTCCGTGAAGACAGCAAGAAGACAACTTTGAGGCTGGTGGAAATGGAATCCTCTTACCTGACTGTTGATTTC TTCAGGAAACTTCCCCTAGAGGCGGAGAAGGGTGGAGATCCAACTGTCTCTAATGTAGACCGATACGCAGAGGGGCATTTTCGTAGAATAGGATCAAACG TATCTTCTTATGCTGGTATGGTGTCTCAGACACTGAGGAATTCAATTCCAAAGGCTGTGGTTCATTGTCAAGTGAAGGAGGCCAAGCGATCTTTACTGGA TCACTTCTATACCCAAGTGGGTAAAAAGGAGGGAAAGCAACTTGCAGCATTGCTAGATGAAGATCCTGCATTGATGGAAAGGAGGCAGAAATGTGCAAGA AGGCTTGAGTTATACAAAAATGCAAGGGATGAGATTGATTCAGTCTCATGGGCTGCATGA
AA sequence Show only first row Show all	>Potri.001G147500.2 pacid=42791642 polypeptide=Potri.001G147500.2.p locus=Potri.001G147500 ID=Potri.001G147500.2.v4.1 annot-version=v4.1 MATMESLISLVNRIQRACTILGDYGGDSGGAAAASLPTLWESLPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTEPGITEYAEFLH KQRERFTDFAMVRKEIQDETDKITGKSKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPESIVKDIENMVRLYVEKPNCIILAITPANQDIATSD AIKLAREVDPAGERTFGVLTKLDLMDKGTNAQDVLEGRAYPLQHPWVGIVNRSQADINKNVDMIAARRREREFFSTSPDYGHLAGRMGSEYLAKLLSKHL ESVIKTRIPGITSLINRSIDDLESELDHLGRPVAIDAGAQLYTILELCRAFDRVFKEHLDGGRPGGDRIYGVFDYQLPTALRKLPFDRHLSLQNVRKVVS EADGYQPHLIAPEQGYRRLIDGALNYFRGPAEASVDAVHFILKEIVRRSIGETQELKRFPTLQAEIASAAYDALERFREDSKKTTLRLVEMESSYLTVDF FRKLPLEAEKGGDPTVSNVDRYAEGHFRRIGSNVSSYAGMVSQTLRNSIPKAVVHCQVKEAKRSLLDHFYTQVGKKEGKQLAALLDEDPALMERRQKCAR RLELYKNARDEIDSVSWAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.001G147500 [exp]	0	1
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	7.21	0.8992
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	8.83	0.8905
AT3G48210			unknown protein		Potri.015G080900 [exp]	10.48	0.8793
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Potri.007G026700 [exp]	11.09	0.8030	CHR904,SOM1.2
AT1G53140		DRP5A	Dynamin related protein 5A (.1...		Potri.011G118500 [exp]	12.64	0.8961
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	15.29	0.8965
AT4G13370			Plant protein of unknown funct...		Potri.018G072500 [exp]	15.81	0.8969
AT1G54385			ARM repeat superfamily protein...		Potri.019G033900 [exp]	16.12	0.8918
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.002G087600 [exp]	20.66	0.8320
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.006G057800 [exp]	20.78	0.8839

Compare expression of checked genes

Potri.001G147500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.