Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14390 675 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G02780 667 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G03770 466 / 1e-153 Leucine-rich repeat protein kinase family protein (.1.2) AT5G14210 360 / 5e-113 Leucine-rich repeat protein kinase family protein (.1) AT5G63410 298 / 8e-91 Leucine-rich repeat protein kinase family protein (.1) AT4G39110 172 / 2e-44 Malectin/receptor-like protein kinase family protein (.1) AT2G21480 167 / 9e-43 Malectin/receptor-like protein kinase family protein (.1) AT5G28680 164 / 6e-42 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT1G30570 162 / 4e-41 HERK2 hercules receptor kinase 2 (.1) AT3G04690 160 / 1e-40 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G039000 [exp] 486 / 3e-161 AT3G03770 933 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G064300 [exp] 450 / 4e-147 AT3G03770 896 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.008G014300 [exp] 442 / 8e-145 AT3G03770 692 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G095600 [exp] 360 / 4e-113 AT5G14210 720 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G093100 [exp] 358 / 2e-112 AT5G14210 681 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G333300 [exp] 219 / 4e-61 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G061700 [exp] 177 / 3e-46 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.009G120400 [exp] 174 / 4e-45 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 171 / 3e-44 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013262 [exp] 735 / 0 AT1G14390 632 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030785 [exp] 705 / 0 AT1G14390 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10005689 [exp] 454 / 3e-149 AT3G03770 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10020303 [exp] 447 / 2e-146 AT3G03770 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032058 [exp] 366 / 2e-115 AT5G14210 873 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035225 [exp] 363 / 3e-114 AT5G14210 854 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033407 [exp] 360 / 7e-113 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032059 [exp] 357 / 8e-112 AT5G14210 870 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10022340 [exp] 356 / 1e-111 AT5G14210 876 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034873 [exp] 354 / 8e-111 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Potri.001G147700.1 pacid=42793524 polypeptide=Potri.001G147700.1.p locus=Potri.001G147700 ID=Potri.001G147700.1.v4.1 annot-version=v4.1 ATGCGGATCTCCAGTTTCACTTGCTCGTTCGCAGCTCTATTCACTCTGATTGTCATGCAAGTCTCAATTTCGAGAGGACAATTAGCGCCAAGTGAAACAA GAATTCTTTTCCAGGTTCAGCAACTCCTTGAATATCCTCAGGTTCTTCAAGGATGGAATAACTGGACCAACTTTTGCTATCTCCCTCCCTCACCTTCTCT AAAAGTTGTTTGCTCAAATAGTCATGTAACTGAATTAACTGTCGTTGGAAACAAAAGCAGCTCCTCTGCATCTCCCAGCAGCCCAAAACAAAATACCTTG TCTGACAACTTCTCTATAGATGCTTTCTTCACCACCCTAACAAATCTTTCAAATTTGAAGGTGTTGTCACTTGTGTCCTTGGGATTGTGGGGTCCCTTGC CTACCAAGATCAACAGGTTTTGGTCTCTTCAAGCACTTAATATCAGCTATAATTTCATTCATGGCCAGATTCCTCAAGATATTCTGTCGTTAAAGAATCT CACTAGTCTTGTTTTGGCTCACAATTTGCTGAACGGAACAGTCCCAGATCTCAGAAGCTTAGTTCTACTTCAAGAGCTAAATTTGGGTGGCAATCATCTT GGACCAACCTTTCCTTCGCTAGGTAACAATCTTGTTACCATCATCCTGAAGAACAACTCCTTGAGATCAGTTATTCCTTCAGAAATCAAGAAGTTCAATC AGCTTCAGCAGTTGGACATCTCTTCCAACAAACTCATCGGACCAATCCCACCTGCTTTGTTCTCTCTTCCTTCACTTCAGTATCTTGATTTAGCCCAGAA TCAATTAAGCGGGGCTCTTCCAACAAATATATCTTGCAGTGTTAAGCTTCAATTTGTGGACATCTCTCACAACATTTTGATTGGAAAATTACCTTCCTGC ATTGCAAGCAACACTTCAACTCGGACAGTCATCAGCTCATGGAATTGCTTGTCTGGCGGTAAAAATGCAAGTTACCAGCACCCTTACTCATTCTGCAATA AAGAAGCATTGGCTGTGAAGCCCCCAGCTAAAAGTAAGGAGCACAAGTCTTCCACTATCAAACTTGGAATAGTACTTGGTCTTGTTGGAGGTGTTCTTGG GATCGCAGGTGTTCTTGGATTATTGATTTTTGTGATCATTAGAAGATCAAAAACAGCAGCAGCTGATGATCATGTATATAGCATATTTGATGGATCTGTT ACCAGTAAAAGGTCTGTTGCCAGTAAAAAGTCTGTTCGCAGAGCCGTTGATTCAAGGCGTGTGCCTCAGACGATGAGGTCGGCAGCAATAGGGCTTCCGC CTTATCGTGTCTTCACATTGGAGGAAATGGAAGATGCAACAAACAACTTTGATCCATTGAATTTTATAGGAGAAGGATCCCAGGGACAACTCTATAAAGG TTGTCTCATAGATGGTTCAGTAGTCCTGGTGAAATGTGTGAAATTAAAGCAGAAGAATTTGCCTCAAAGCATGATTCAGCAGATTGAGGTACTATCAAAG CTGAGGCATCTGCATTTGGTCAGCATTCTCGGACACACCATCGTCACATATCAGGATCATTCGAGCACAGCTGGCACAGTATTTGTTGTCCTTGAACACG TCTCCAATGGATCTCTAAGAGATTACCTAGCTGATGAGAGAAAAAGGGAGATGCTGAGATGGCCACAAAGAATGGCGATTATCATTGGCGTTGCGAGGGG AATCCAGTTCTTGCACACTGGAGTTGCTCCTGGCATTTTTGGGAATAACGTAAAGATCGAGAATGTTTTGTTGGATGATACTCTTACTGCGAAACTCAGT GACTACAAGATTCCCCTGCCATCAAAGGTAGGCTCGGAGAGTCCTCTCAATGGACAAGATGCGTTCAATATCAACAGTAGTGAAAATGCAGAAAAAGAAG ATGTCTATCAACTAGGTGTCATTTTACTTCAAGTCATTACGGGTAAGCTTGTCACATCCAACCGTGCATTGGACGAGTTAAGGATACAGCTCGAAAAAGG CTTGGCAGAAGCGCCATCGAAGTTACAAGCCTTGGTCGATCCATCCACACGGGGTACTTTTGCATATGAATCCCTAAAAACTGCAGCTGAAATGGCTATT AATTGCCTAAACAAAGAATCAAGAACTCGGCCATCAATAGAAGATGTACTTTGGAATTTGCAGTATTCCATTCAAATTCAAGAAGGATGGACTAGTACCA GTGGAAACCTTGGCGGTCCACACTCGTCTTCTTATTAA
AA sequence Show only first row Show all	>Potri.001G147700.1 pacid=42793524 polypeptide=Potri.001G147700.1.p locus=Potri.001G147700 ID=Potri.001G147700.1.v4.1 annot-version=v4.1 MRISSFTCSFAALFTLIVMQVSISRGQLAPSETRILFQVQQLLEYPQVLQGWNNWTNFCYLPPSPSLKVVCSNSHVTELTVVGNKSSSSASPSSPKQNTL SDNFSIDAFFTTLTNLSNLKVLSLVSLGLWGPLPTKINRFWSLQALNISYNFIHGQIPQDILSLKNLTSLVLAHNLLNGTVPDLRSLVLLQELNLGGNHL GPTFPSLGNNLVTIILKNNSLRSVIPSEIKKFNQLQQLDISSNKLIGPIPPALFSLPSLQYLDLAQNQLSGALPTNISCSVKLQFVDISHNILIGKLPSC IASNTSTRTVISSWNCLSGGKNASYQHPYSFCNKEALAVKPPAKSKEHKSSTIKLGIVLGLVGGVLGIAGVLGLLIFVIIRRSKTAAADDHVYSIFDGSV TSKRSVASKKSVRRAVDSRRVPQTMRSAAIGLPPYRVFTLEEMEDATNNFDPLNFIGEGSQGQLYKGCLIDGSVVLVKCVKLKQKNLPQSMIQQIEVLSK LRHLHLVSILGHTIVTYQDHSSTAGTVFVVLEHVSNGSLRDYLADERKREMLRWPQRMAIIIGVARGIQFLHTGVAPGIFGNNVKIENVLLDDTLTAKLS DYKIPLPSKVGSESPLNGQDAFNINSSENAEKEDVYQLGVILLQVITGKLVTSNRALDELRIQLEKGLAEAPSKLQALVDPSTRGTFAYESLKTAAEMAI NCLNKESRTRPSIEDVLWNLQYSIQIQEGWTSTSGNLGGPHSSSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14390			Leucine-rich repeat protein ki...		Potri.001G147700 [exp]	0	1
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	1.73	0.9447
AT3G55430			O-Glycosyl hydrolases family 1...		Potri.008G056000 [exp]	4.24	0.9249	Pt-GNS2.1
AT1G32090			early-responsive to dehydratio...		Potri.001G133800 [exp]	5.29	0.9248
AT3G51470			Protein phosphatase 2C family ...		Potri.005G102500 [exp]	6.92	0.9138
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	7.34	0.9342
AT5G60880		BASL	breaking of asymmetry in the s...		Potri.015G048600 [exp]	7.74	0.9255
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	8.36	0.9107
AT3G21770			Peroxidase superfamily protein...		Potri.014G135580 [exp]	8.48	0.9033
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	11.48	0.9294
AT1G80370		CYCA2;4	Cyclin A2;4 (.1)		Potri.003G058200 [exp]	13.41	0.9093

Compare expression of checked genes

Potri.001G147700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.