Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CXIP4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28910 198 / 3e-61 CXIP4 CAX interacting protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040809 [exp] 204 / 1e-63 AT2G28910 210 / 7e-66 CAX interacting protein 4 (.1) Lus10016543 [exp] 203 / 2e-63 AT2G28910 213 / 6e-67 CAX interacting protein 4 (.1) Lus10004961 [exp] 177 / 2e-53 AT2G28910 182 / 3e-55 CAX interacting protein 4 (.1) Lus10005458 [exp] 176 / 1e-52 AT2G28910 184 / 9e-56 CAX interacting protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF13917 [poplar] [flax] zf-CCHC_3 Zinc knuckle
Representative CDS sequence Show only first row Show all	>Potri.001G148000.8 pacid=42792760 polypeptide=Potri.001G148000.8.p locus=Potri.001G148000 ID=Potri.001G148000.8.v4.1 annot-version=v4.1 ATGCCGGCGACAGCAGGAAGAGTTCGCATGCCGGCGAACAACAGGGTGCACAGTAGTGCAGCCCTGCAGACTCACGGTATATGGCAGAGTGCAATTGGGT ATGACCCCTATGCACCTAACAAGGATGACTCCAAAAAATCATCCCAGGAGAAGTCCTCCACCGCTGAGCCTGAAGGTGAGAATGCTTATGCCAGCTTTCA GGGTCTCCTGGCGCTTGCCCGTATTACCTCATCCAATGCTGATGAGGCTCGTGGTGCTTGTAAAAGATGTGGTCGTGTAGGCCACCTTGCCTTTCAATGT AGGAATTTTGTGAGTGTCAAGGATGGTGATAAAGAGAAGGATGCGGAAGCAGTTCAGGCTGCGGTTTTGTCTGGGTTGGAGAAGATAAAAGGGAATGGGA AACGAGTCGTTCAGGGTGAGGAGAGCGAGGATGATGAGGATGAGAGTGAGACTTCGGATTCTGAGGAGGATTCGGAGATTGAGAGGATTATTGCTGAAAG GTATGGTAAGAAGAAGAGTAGTACTCTGGGGAAGTCATCTAGGAAGAAGGAGGACTCTGATGACGATGGTTCAGATTCTGGGAGGAAGAAGAGAGGAAGG TCGAAGAAAAGGAGGATTAAGAAGAGGGTAAGTAGCGATTCAGAGGATGGGGATGAGGATAGGAGGAAGAGGAGGAAGGAGAAAAGGAGGAAGAAGAACG AGTCATCAGATGAAGAGGATGATCGGCAACGCCGTAAGAGGAAGAGTAGGAAGGAAAAGAGGAGAAGGAGAAGTCATCGGCATTCTGATGATTCTGACTC AGATGAGCATGAGCATTCTGGTCGAAGGCACAAGCAGAAGAGCAGGAAGACATCATCTTTGTCTGATCCTGATGCCTCTGGCTCTGATGATCCTCGGGTG GGAAGAGATACAAAGCGTTCTGAGAAGAAGATCAGGAAACGCCATCATGAAGATGATGAGTGA
AA sequence Show only first row Show all	>Potri.001G148000.8 pacid=42792760 polypeptide=Potri.001G148000.8.p locus=Potri.001G148000 ID=Potri.001G148000.8.v4.1 annot-version=v4.1 MPATAGRVRMPANNRVHSSAALQTHGIWQSAIGYDPYAPNKDDSKKSSQEKSSTAEPEGENAYASFQGLLALARITSSNADEARGACKRCGRVGHLAFQC RNFVSVKDGDKEKDAEAVQAAVLSGLEKIKGNGKRVVQGEESEDDEDESETSDSEEDSEIERIIAERYGKKKSSTLGKSSRKKEDSDDDGSDSGRKKRGR SKKRRIKKRVSSDSEDGDEDRRKRRKEKRRKKNESSDEEDDRQRRKRKSRKEKRRRRSHRHSDDSDSDEHEHSGRRHKQKSRKTSSLSDPDASGSDDPRV GRDTKRSEKKIRKRHHEDDE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Potri.001G148000 [exp]	0	1	CXIP4.1
AT3G07260	FHA		SMAD/FHA domain-containing pro...		Potri.002G245900 [exp]	1.00	0.7366
AT5G25360			unknown protein		Potri.006G254000 [exp]	1.73	0.6716
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.001G179800 [exp]	10.00	0.6967
AT4G04614			unknown protein		Potri.005G213000 [exp]	13.74	0.6485
AT4G25390			Protein kinase superfamily pro...		Potri.012G131900 [exp]	17.66	0.6130
AT1G08315			ARM repeat superfamily protein...		Potri.001G028300 [exp]	20.44	0.6240
AT4G08330			unknown protein		Potri.002G083600 [exp]	23.45	0.6187
					Potri.016G019100 [exp]	24.49	0.6142
AT1G68490			unknown protein		Potri.012G056500 [exp]	26.00	0.6350
AT1G47750		PEX11A	peroxin 11A (.1)		Potri.014G042000 [exp]	26.15	0.5779

Compare expression of checked genes

Potri.001G148000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.