Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47010 2008 / 0 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT2G03270 205 / 1e-55 DNA-binding protein, putative (.1) AT5G35970 198 / 1e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G15570 192 / 2e-50 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G05460 190 / 4e-49 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 183 / 1e-46 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 180 / 2e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37030 166 / 2e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 162 / 5e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G37150 163 / 7e-41 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086400 [exp] 2340 / 0 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.006G054600 [exp] 204 / 3e-55 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.013G073900 [exp] 207 / 1e-54 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G056700 [exp] 192 / 3e-50 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G155400 [exp] 183 / 6e-47 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G047500 [exp] 181 / 2e-46 AT1G05460 1051 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G143000 [exp] 177 / 2e-44 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 175 / 7e-44 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G168300 [exp] 172 / 3e-43 AT4G30100 1620 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003024 [exp] 2138 / 0 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 2085 / 0 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10024974 [exp] 210 / 4e-58 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 206 / 9e-56 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10024527 [exp] 209 / 4e-55 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038906 [exp] 174 / 2e-44 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033462 [exp] 176 / 3e-44 AT4G30100 1589 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037353 [exp] 174 / 5e-44 AT1G65810 543 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10035776 [exp] 172 / 8e-43 AT1G65810 633 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015030 [exp] 169 / 9e-43 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF09416 [poplar] [flax] UPF1_Zn_bind RNA helicase (UPF2 interacting domain) CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.001G148100.1 pacid=42789374 polypeptide=Potri.001G148100.1.p locus=Potri.001G148100 ID=Potri.001G148100.1.v4.1 annot-version=v4.1 ATGGATGCCCAAGACAACAGCCTATACGAAACGGCGTCGCAGCCAGACACAGCAACAGACGCCTACACCTTCCTTGAATTCAACACACAAGGCGAATCCG ATTTTGACTACCCCGAATTCCGCTCTCCGGTGACCTGGCCCACTCCTTCCGACTCACTTGCCGCCACATCCTCCTCCGTAGACCCTACCTCATCCGACCA CCGTGCCGCCGCTTCCAATTCCGATCACCACTCTGATTCACCTGCTGCGTCAAAATCTGCTGCGCGTGGAGGAGCGAATAGTGGGACCCAGGGGGTGGTG GAGGGGTTAGTGGCGAGTATGGGAGGGTTGAATTTTGAAGAGACGGGAGATGATGATGGGTATGATTTTGGGAAAGGGGATTTTACGGAGCACGCGTGTA GGTACTGTGGGGTTTCGAATCCTGCGTGTGTAGTGAGGTGTAATGTGCCGTCCTGTAGAAAGTGGTTTTGTAATTCGAGAGGGAATACCTCTGGTTCGCA TATTGTTAATCATCTGGTTCGAGCAAAGCATAAAGAGGTCTGTCTCCATAAAGACAGCCCTCTGGGAGAAACAATACTTGAGTGCTACAACTGTGGTTGC CGAAATGTGTTTCTTCTTGGGTTTATATCAGCCAAGACAGAAAGTGTTGTTGTCCTCCTCTGTAGGGAACCTTGCTTGAATGTTAATGCACTGAAGGACA TGAACTGGGACCTGAGCCAGTGGTGCCCCCTAATTGATGATAGGTGTTTTCTACAGTGGCTTGTGAAGATCCCATCCGAACAGGAGCAGTTGAGGGCACG CCAAATTAGTGCTCAACAAATAAATAAAGTAGAAGAACTTTGGAAAACAAATCCTGATGCCACCCTTGAAGATCTTGAGAAGCCTGGTGTTGATGATGAA CCTCAGCCTGTAGCATTGAAGTATGAAGATGCATATCAGTATCAAAATGTATTTGCTCCACTTATTAAGCTTGAAGCTGACTATGATAAAATGATGAAAG AGTCTCAAAGCAAGGATAATGTCACTATTCGATGGGATATTGGCCTGAACAAGAAGCGTGTTGCATATTTTGTATTTCCAAAGGAGGACAATGAGTTGCG CCTTGTACCTGGTGATGAGTTGCGACTGCGCTATTCTGGAGATGCAGCTCATCCAGCATGGCAATCAGTTGGGCACGTGATCAAGCTAACTGCACAAGAG GAGGTTGCACTCGAGCTTCGTGCTAGTCAGGGAGTTCCTGTTGATATGAACCATGGTTTTAGTGTTGATTTTGTTTGGAAGAGTACAAGCTTTGACCGAA TGCAGGGAGCAATGAAAACTTTTGCAGTGGATGAAACCAGTGTCAGTGGGTATATATACCATCACTTGTTGGGCCATGAGGTTGAGAATCAAACAGTTCG CAGTGCATTGCCTCGCCGTTTTGGTGCACCTGGTCTCCCAGAGCTGAATGCATCACAAGTTCTTGCTGTGAAGAATGTCCTCCAGAAGCCTATAAGTTTG ATTCAAGGTCCACCTGGAACAGGAAAAACTGTCACTTCTGCCGCCATTGTATATCATATGGCTAAACAGGGACAAGGACAGGTTTTGGTGTGTGCCCCAA GTAATGTAGCTGTAGATCAGCTAGCTGAGAAGATAAGTGCCACCGGCTTAAAGGTTGTTAGGCTATGTGCAAAATCAAGGGAAGCTGTTAGTTCTCCTGT TGAGCATCTCACCCTTCACTATCAGGTTAGACATCTAGACACTTCAGAGAAAAGTGAACTTCACAAGTTGCAACAGTTGAAAGATGAGCAAGGAGAACTG TCCAGTAGTGATGAGAAAAAATACAAAGCTCTGAAACGAGCAACAGAAAGGGAAATTTCTCAAAGTGCTGATGTCATCTGTTGCACTTGTGTTGGTGCTG GAGATCCTCGGTTGGCAAATTTTAGGTTTCGCCAGGTACTTATTGATGAGTCAACTCAGGCGACTGAACCAGAGTGTCTCATTCCTTTGGTACTTGGGGC GAAGCAGGTCGTTTTTGTTGGTGACCATTGCCAGCTTGGTCCTGTCATTATGTGCAAGAAAGCTGCTCGTGCTGGGTTAGCCCAGTCTCTCTTTGAGCGC CTTGTTTTACTTGGTGTGAAACCAATTAGATTGCAGGTTCAATATCGCATGCACCCATCTCTTTCTGAATTTCCATCCAACAGCTTTTATGAAGGCACTC TGCAAAATGGTGTGACTGTCAATGAGAGACAGTCATCGGGCATTGATTTCCCTTGGCCTGTGCCAAATCGTCCAATGTTCTTTTATGTCCAGATGGGACA AGAAGAGATAAGTGCCAGTGGGACATCCTATCTAAATCGTACCGAGGCTGCAAATGTTGAAAAAATTGTAACTACGTTTTTGAGGAGCGGTGTAGTCCCT AGCCAGATTGGAGTGATAACACCTTATGAGGGACAGAGAGCATATATTGTGAATTATATGTCAAGAAATGGTGCCCTCAGACAGCAACTATACAAGGAAA TTGAGGTTGCAAGTGTTGATTCATTTCAAGGAAGGGAAAAGGACTACATTATTTTGTCTTGTGTCAGGAGCAACGAACATCAGGGCATTGGATTTCTTAA TGATCCTCGGAGATTGAATGTAGCTCTAACCCGTGCTCGATATGGTATTGTCATCTTGGGAAACCCTAAAGTTCTAAGCAAGCAGCCTTTGTGGAATAGC TTATTAACTCACTACAAGGAACATGAGTGCTTGGTTGAAGGACCTTTGAATAACTTGAAGCAGAGTATGGTTCAATTTCAAAAGCCCAAAAAGATTTATA ATGATAGGAGGCTTTTCTTTGGTGGTGGACCTGGAATTATCCCTAATGATAATTTTGGGTCTGTTGCCTCAGCTAGCCCAAATGCTGATAGAAGAAACTC CCGTGCCAGGGGATCTTATATGCCACCTGCCCCACCCAATGGTACCCACAAGCCTGGTGCTCATCCTGCTGGGTTTCCAATGCCTCGGGTCCCCATTCCA CCATTTCATGGTGATCCACCTTCTCAACCATATGCTATTCCAACTCGTGGAGCTGTGCATGGGCCAATTGGAGCTGTTCCTCAAGTCCCTCAGCCAGGAA TTCGAGGTTTTGGTGCTGGGCGCGGCAATGCTGGTGCACCTATTGGAAGTCATCTCCCACACCAGCAAGGCACTCAGCAAGGCATTGGGAACATTGGATC TTTCAATTTTTCTTCCCTGGAGAATCCAAATAGCCAGCCATCTGTGGGTAGTGCATTATCTCAGCCTGGATATAATAATATTCCAGTTCAGGGATCGAGC CAAACATTTCGTGATGGATTTTCCATGGGGGGTATGTCCCAGGAGTTCTTGGGTGATGATTTCAAAAGCCAGGGATCGCATGTTCCTTACAATGTTGCTG ATTTCTCCACTCAGGCATCTCAAAGTGGATATGCTGTGGATTATGTTACACAAGGAGCCCAAGGTGGGTTTCCAGGCAACTTCTTGAATCAGAATTCTCA AGCTGGATTTTCTCGTTTTGGTTCTGGAAATGATTTCATGTCTCAGGATTACATGGCTCATGGATCACAAGGGCTATTCACTCAGGTTGGCTTTAATGAT CCCTCACAAGATGATGCATCGCAAAGCCACTTTGGCATAGCCAATCCGAACCAACTTCAATCTCAGGGCTTGATGAATTCTCTTTACTCTCAGCCCTTTG CCCACTACAACACTCAGCCGGTGAACTTACAGGCTCCACAACAGCAGTCTCAGCAGGGTCAGGGCACCCAAAACCAGAAAATCCATTACAACGGTTGA
AA sequence Show only first row Show all	>Potri.001G148100.1 pacid=42789374 polypeptide=Potri.001G148100.1.p locus=Potri.001G148100 ID=Potri.001G148100.1.v4.1 annot-version=v4.1 MDAQDNSLYETASQPDTATDAYTFLEFNTQGESDFDYPEFRSPVTWPTPSDSLAATSSSVDPTSSDHRAAASNSDHHSDSPAASKSAARGGANSGTQGVV EGLVASMGGLNFEETGDDDGYDFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGC RNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGVDDE PQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQE EVALELRASQGVPVDMNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQTVRSALPRRFGAPGLPELNASQVLAVKNVLQKPISL IQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQGEL SSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVFVGDHCQLGPVIMCKKAARAGLAQSLFER LVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVP SQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNS LLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGIIPNDNFGSVASASPNADRRNSRARGSYMPPAPPNGTHKPGAHPAGFPMPRVPIP PFHGDPPSQPYAIPTRGAVHGPIGAVPQVPQPGIRGFGAGRGNAGAPIGSHLPHQQGTQQGIGNIGSFNFSSLENPNSQPSVGSALSQPGYNNIPVQGSS QTFRDGFSMGGMSQEFLGDDFKSQGSHVPYNVADFSTQASQSGYAVDYVTQGAQGGFPGNFLNQNSQAGFSRFGSGNDFMSQDYMAHGSQGLFTQVGFND PSQDDASQSHFGIANPNQLQSQGLMNSLYSQPFAHYNTQPVNLQAPQQQSQQGQGTQNQKIHYNG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.001G148100 [exp]	0	1
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Potri.017G056700 [exp]	6.70	0.8964
					Potri.006G040201 [exp]	7.61	0.9178
					Potri.014G093150 [exp]	10.77	0.9150
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Potri.016G127500 [exp]	12.48	0.8780
AT4G38440		IYO	MINIYO, unknown protein		Potri.009G139900 [exp]	12.64	0.8933
AT1G43760			DNAse I-like superfamily prote...		Potri.014G188801 [exp]	13.74	0.9097
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.005G010133 [exp]	21.21	0.8456
AT4G13970			zinc ion binding (.1)		Potri.002G140800 [exp]	22.04	0.8419
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	22.22	0.7431	Pt-APP.2
AT1G43760			DNAse I-like superfamily prote...		Potri.014G189001 [exp]	22.44	0.9034

Compare expression of checked genes

Potri.001G148100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.