Plant FIBer expression Database

Potri.001G148200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44170 46 / 6e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001078
[exp]
50 / 1e-07 ND 39 / 0.001
Lus10031894
[exp]
44 / 3e-05 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF10294 Methyltransf_16 Lysine methyltransferase
Representative CDS sequence
>Potri.001G148200.2 pacid=42792230 polypeptide=Potri.001G148200.2.p locus=Potri.001G148200 ID=Potri.001G148200.2.v4.1 annot-version=v4.1
GAGATAGACATAGCCGGTCAAACACTTAAAATCCACGAACTTGGAGAGGTGTATGACTCTTTAACGGGCCGTGCATTCACCGGGTCATGGATTTGGGACT
CAGCCTTGCTACTCTCTCGGTGGCTCGCGACTTCTCAGTTTGATTTGCGAGACAAGTCCGTCATCGAGCTCGGCGCGGGAGCCGGACTGCCAGGCTTGAC
AGCGGCACTACTTGGCGCCAGTCGAGTCTTGCTAACGGACATCGCGCCGCTGCTCCCTGGCTTAGTAAAGAACGTTGAAGCGAACGAGTTGGAAGACCGA
GTCGAGGTGAGGGAACTCGTTTGGGGATCGGAGGAGTCGCTGAGTCGAATAGGAGAGTTGAGGCGATTCGACGTCGTGCTGCTGAGTGATGTGTTTTTTG
ACCTGGAGGAGATGGCGGCGCTTGGGCGGACGTTGAAGAAGGTGTCTGGGAACAAGACCAGGATTTTGGCGGCGAGCGAGGTGAGGTTTTGGACAGGTGA
GTGCTTAAATGAGTTGGTGAGTCAGGGTTTCAAAGTTGTAGAGGTGCCGATTCAAGAGGATGGGAGTGACGGTGGCAGGGATATCTTTGCAGTGTACAAC
ATAATCCCGCCGGATGAAGAGGATTGCCATAACAACATGTCGGGCTCGATCATAAGAAGGTAA
AA sequence
>Potri.001G148200.2 pacid=42792230 polypeptide=Potri.001G148200.2.p locus=Potri.001G148200 ID=Potri.001G148200.2.v4.1 annot-version=v4.1
EIDIAGQTLKIHELGEVYDSLTGRAFTGSWIWDSALLLSRWLATSQFDLRDKSVIELGAGAGLPGLTAALLGASRVLLTDIAPLLPGLVKNVEANELEDR
VEVRELVWGSEESLSRIGELRRFDVVLLSDVFFDLEEMAALGRTLKKVSGNKTRILAASEVRFWTGECLNELVSQGFKVVEVPIQEDGSDGGRDIFAVYN
IIPPDEEDCHNNMSGSIIRR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G44170 S-adenosyl-L-methionine-depend... Potri.001G148200
[exp]
0 1
AT4G23990 ATCSLG3 ARABIDOPSIS THALIANA CELLULOSE... Potri.003G142400
[exp]
2.00 0.9044
AT2G37590 DOF AtDof2. 4, ATDO... DNA binding with one finger 2.... Potri.010G205400
[exp]
2.64 0.9137
AT4G37250 Leucine-rich repeat protein ki... Potri.005G142300
[exp]
3.00 0.9078
AT4G20270 BAM3 BARELY ANY MERISTEM 3, Leucine... Potri.003G157300
[exp]
4.69 0.9095
AT5G16560 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-... Potri.012G042100
[exp]
5.00 0.9040
AT5G57130 Clp amino terminal domain-cont... Potri.018G140900
[exp]
5.47 0.8981
AT1G28220 ATPUP3 purine permease 3 (.1) Potri.002G099600
[exp]
6.63 0.8681
AT4G20270 BAM3 BARELY ANY MERISTEM 3, Leucine... Potri.001G073600
[exp]
8.94 0.8924
AT3G55370 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) Potri.001G238400
[exp]
10.95 0.8975
AT2G02240 MEE66 maternal effect embryo arrest ... Potri.018G015800
[exp]
11.48 0.8919

Potri.001G148200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.